View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_5 (Length: 599)
Name: NF9846_5
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_5 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 7 - 575
Target Start/End: Original strand, 40514500 - 40515068
Alignment:
| Q |
7 |
tagattatactgatctgtatgtctttctacaaactggacatgtcaacttcattatcaaccaaggatcaacacaagcaacatgaaacaaatgaccacaacc |
106 |
Q |
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| T |
40514500 |
tagattatactgatctgtatgtctttctacaaactggacatgtcaacttcattatcaaccaaggatcaacacaagcaacatgaaacaaatgaccacaact |
40514599 |
T |
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| Q |
107 |
aggaagcattctcaacaaatcagattctttataatccatcaaacatattgagcagcaacaactactaattgaattaatattattgctgttacataatttc |
206 |
Q |
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| T |
40514600 |
aggaagcattctcaacaaatcagattctttataatccatcaaacatattgagcagcaacaactactaattgaattaatattattgctgttacataatttc |
40514699 |
T |
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| Q |
207 |
acttcagataaatatggtatagtcctaatttgatcattgcttctgcacacattt---gtagtactttgttccaaacgtggttgatgttgttgttgatcag |
303 |
Q |
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| T |
40514700 |
acttcagataaatatggtatagtcctaatttgatcattgcttctacacacatttgtagtagtactttgttccaaacgtggttga---tgttgttgatcag |
40514796 |
T |
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| Q |
304 |
ctggttccattacagtaattgtggtttggttggagtttgtgtcatgtactccaagaggc---tgagaaggaggttgagtagaagaagaagtgggtatagt |
400 |
Q |
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| T |
40514797 |
ctggttccattacagtaattgtggtttggttggagtttgtgtcatgtactccaagaggctgatgagaaggaggttgagt---agaagaagtgggtatagt |
40514893 |
T |
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| Q |
401 |
acatagataagaggcaattgtaattaagagagttatcattattaggcacacaagaaataagatgaaatatgccannnnnnnaaactcttcatcatgaatg |
500 |
Q |
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| T |
40514894 |
acatagataagaggcaattgtaattaagagagttatcattattaggcatacaagaaataagatgaaataagccattttcttaaactcttcatcatgaatg |
40514993 |
T |
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| Q |
501 |
ttcatgtctctactataattatgagatcattggttaattttgagcatgatgattttgtttatatatgctaatttc |
575 |
Q |
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| T |
40514994 |
ttcatgtctctactataattatgagatcattggttaattttgagcatgatgattttgtttatatatgctaatttc |
40515068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 40509283 - 40509350
Alignment:
| Q |
142 |
ccatcaaacatattgagcagcaacaactactaattgaattaatattattgctgttacataatttcacttca |
212 |
Q |
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| T |
40509283 |
ccatcaagcatatgaagcagcaacaactact---tgaattaatactattgctgttacacaatttgacttca |
40509350 |
T |
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