View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_6 (Length: 508)
Name: NF9846_6
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_6 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 3 - 498
Target Start/End: Complemental strand, 6916343 - 6915848
Alignment:
| Q |
3 |
agcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatagatagaagccaacttaaaggcaagttcattggaatcaacat |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6916343 |
agcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacat |
6916244 |
T |
|
| Q |
103 |
catgagcagcaccatctgtcaagacaactcggagattttcaactggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916243 |
catgagcagcaccatctgtcaagacaactcggagattttgaactggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgc |
6916144 |
T |
|
| Q |
203 |
agggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcact |
302 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916143 |
agggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcact |
6916044 |
T |
|
| Q |
303 |
cgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaa |
402 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916043 |
cgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaa |
6915944 |
T |
|
| Q |
403 |
ctgtagcatcaaccccatactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
498 |
Q |
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| T |
6915943 |
ctgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
6915848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 294 - 416
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
| Q |
294 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
393 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
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| Q |
394 |
gctttccaactgtagcatcaacc |
416 |
Q |
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| T |
15039369 |
gctttccaactgtagcatcaacc |
15039391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 15038314 - 15038438
Alignment:
| Q |
168 |
gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg |
267 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
15038314 |
gagttggcagcttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctg |
15038413 |
T |
|
| Q |
268 |
acccagcaggaagtggttcaatata |
292 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
15038414 |
acccagcagggagtggttcaatata |
15038438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 15038055 - 15038167
Alignment:
| Q |
50 |
tctaaaagcatagatagaagccaacttaaaggcaagttcattggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaactgga |
149 |
Q |
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||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15038055 |
tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcggagattttcaacggga |
15038154 |
T |
|
| Q |
150 |
tgtccaatcaagg |
162 |
Q |
| |
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|||||||| |||| |
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| T |
15038155 |
tgtccaattaagg |
15038167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 484
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
430 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
484 |
Q |
| |
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|||||| || |||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15037881 - 15037928
Alignment:
| Q |
1 |
caagcataacaggttctaatataactggtctggaagctgtgtaacact |
48 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
15037881 |
caagcataacaggctctaatatagttggtctggaagcagtgtaacact |
15037928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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