View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_8 (Length: 439)
Name: NF9846_8
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_8 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 48269351 - 48269759
Alignment:
| Q |
11 |
cacagagctgagggctgttctatgtgtcagaaaaagctgcctcatgcccattcagatccagtggttcaggatcaacacgatggcagttcgagtccagtta |
110 |
Q |
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| T |
48269351 |
cacagagctgagggctgttctatgtgtcagaaaaagctgcctcatgcccattcagatccagtggttcaggatcaacacgatggcagttcgagtccagtta |
48269450 |
T |
|
| Q |
111 |
atgattcaagcccaagctacaatagttttccgatggaggacaacataaaagcgcaagcaacaatgagggttgagcctatggtggcatcacccttaaagga |
210 |
Q |
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| T |
48269451 |
atgattcaagcccaagctacaatagttttccgatggaggacaacataaaagcgcaagcaacaatgagggttgagcctatggtggcatcacccttaaagga |
48269550 |
T |
|
| Q |
211 |
aggcgttgttgaacaaggttttagcgcaagaccaggtgccattagcaaattggaagctcataatggagtaagaccttctactgataatactgggatttct |
310 |
Q |
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| T |
48269551 |
aggcgttgttgaacaaggttttagcgcaagaccaggtgccattagcaaattggaagctcataatggagtaagaccttctactgataatactgggatttct |
48269650 |
T |
|
| Q |
311 |
aataattttgagcctcaacatgaaggtggtaggatttttatacaaaatccaaaagaatttgatcataccatgaattcatgtatccaagaaacgattggta |
410 |
Q |
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| T |
48269651 |
aataattttgagcctcaacatgaaggtggtaggatttttatacaaaatccaaaagaatttgatcatagcatgaattcatgtatccaagaaacgattggta |
48269750 |
T |
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| Q |
411 |
ggataggtg |
419 |
Q |
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| T |
48269751 |
ggataggtg |
48269759 |
T |
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Back To:
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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 25241055 - 25241113
Alignment:
| Q |
26 |
tgttctatgtgtcagaaaaagctgcctcatgcccattcagatccagtggttcaggatca |
84 |
Q |
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|||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
25241055 |
tgttatatgtgtcagaaaaaactgcctcatgctcattcagatccagtggttcaggatca |
25241113 |
T |
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