View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9846_9 (Length: 436)

Name: NF9846_9
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9846_9
NF9846_9
[»] chr8 (12 HSPs)
chr8 (4-372)||(25798907-25799280)
chr8 (140-419)||(25488696-25488975)
chr8 (4-109)||(25488593-25488698)
chr8 (7-119)||(25384840-25384952)
chr8 (369-419)||(25385047-25385097)
chr8 (369-408)||(25319118-25319157)
chr8 (369-408)||(25799312-25799351)
chr8 (245-278)||(2517113-2517146)
chr8 (234-278)||(3066037-3066081)
chr8 (245-279)||(16824393-16824427)
chr8 (252-286)||(25385007-25385041)
chr8 (239-276)||(34259817-34259854)
[»] scaffold0070 (2 HSPs)
scaffold0070 (253-367)||(38373-38487)
scaffold0070 (369-408)||(38270-38309)
[»] chr2 (4 HSPs)
chr2 (18-144)||(13695221-13695347)
chr2 (239-278)||(39459784-39459823)
chr2 (236-278)||(5461189-5461231)
chr2 (242-278)||(35198251-35198287)
[»] chr7 (4 HSPs)
chr7 (9-101)||(30162766-30162858)
chr7 (238-276)||(40826514-40826552)
chr7 (244-277)||(7139462-7139495)
chr7 (237-274)||(13859519-13859556)
[»] chr3 (8 HSPs)
chr3 (244-278)||(49636846-49636880)
chr3 (240-290)||(19730217-19730267)
chr3 (240-290)||(19750807-19750857)
chr3 (233-278)||(31207833-31207878)
chr3 (237-278)||(32166203-32166244)
chr3 (238-291)||(47542534-47542587)
chr3 (247-275)||(18268028-18268056)
chr3 (234-278)||(21110483-21110527)
[»] chr6 (4 HSPs)
chr6 (247-278)||(34625742-34625773)
chr6 (247-277)||(6294557-6294587)
chr6 (234-275)||(10764099-10764140)
chr6 (234-294)||(18803242-18803302)
[»] chr4 (5 HSPs)
chr4 (247-278)||(32369932-32369963)
chr4 (236-278)||(24379822-24379864)
chr4 (247-276)||(2796554-2796583)
chr4 (237-278)||(26369450-26369491)
chr4 (239-275)||(843164-843200)
[»] chr1 (4 HSPs)
chr1 (234-277)||(6440870-6440913)
chr1 (245-278)||(26698202-26698235)
chr1 (246-278)||(4769328-4769360)
chr1 (246-278)||(48317604-48317636)
[»] chr5 (2 HSPs)
chr5 (247-292)||(9878038-9878083)
chr5 (249-278)||(28322251-28322280)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 25798907 - 25799280
Alignment:
Q  4 aatgaaagattctcaacatagagtttagaaagaaattcatgttctcaatctatcaaactacaagtaccaaagttaccctcatcgtgaagacaatgtttac 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25798907 aatgaaagattctcaacatagaatttagaaagaaattcatgttctcaatctatcaaactacaagtaccaaagttacccgcatcgtgaagacaatgtttac 25799006  T
Q  104 aacaattctgagacatgttggtacttgtagaaagaaaatatactgcacaacgacaatggaagtg------ccaagtatagctctccattttgtgaggtca 197  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      | ||||||||||||||||||||||||||||    
T  25799007 aacaatactgagacatgttggtacttgtagaaagaaaatatactgcacaacgacaatggaggtgctaactctaagtatagctctccattttgtgaggtca 25799106  T
Q  198 aatcgacacaaacacgaacacctgatgtgatactctatgttgacattggtaataatttgagaaaatgaattaattgaatgtgagcacctgtgtcaatatt 297  Q
    ||| |||||| ||||||||||||||   ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||| |||    
T  25799107 aattgacacagacacgaacacctgacacgatgctacatgttgacattggtaataatttgagaaaatgaattaattgaatgtgatcaccaatatcaaaatt 25799206  T
Q  298 gtttcaatgttgcacaacgaacacaccaatgatcagaagtgttgtccttcaaaataaacaaagaagcatccgaca 372  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  25799207 gtttcagtgttgcacaacgaatacaccaatgatcagaagtgttgtccttc-aaataaataaagaagcatcagaca 25799280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 140 - 419
Target Start/End: Original strand, 25488696 - 25488975
Alignment:
Q  140 aatatactgcacaacgacaatggaagtgccaagtatagctctccattttgtgaggtcaaatcgacacaaacacgaacacctgatgtgatactctatgttg 239  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||  ||||||    
T  25488696 aatatactgcacaacgaaaatggaagtgccaagtatagctctccattttgtgaggtcaaatcgacacagacacgaacacctgacacgatactacatgttg 25488795  T
Q  240 acattggtaataatttgagaaaatgaattaattgaatgtgagcacctgtgtcaatattgtttcaatgttgcacaacgaacacaccaatgatcagaagtgt 339  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25488796 acattggtattaatttgagaaaatgaattaattgaatgtgagcacctgtgtcaatattgtttcaatgttgcacaacgaacacaccaatgatcagaagtgt 25488895  T
Q  340 tgtccttcaaaataaacaaagaagcatccgacattgtattttaatgtgtaaagatcttctacaacaactactgcgcacag 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25488896 tgtccttcaaaataaacaaagaagcatccgacattgtattttaatgtgtaaagatcttctacaacaactactgcgcacag 25488975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 25488593 - 25488698
Alignment:
Q  4 aatgaaagattctcaacatagagtttagaaagaaattcatgttctcaatctatcaaactacaagtaccaaagttaccctcatcgtgaagacaatgtttac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25488593 aatgaaagattctcaacatagagtttagaaagaaattcatgttctcaatctatcaaactacaagtaccaaagttaccctcatcgtgaagacaatgtttac 25488692  T
Q  104 aacaat 109  Q
    ||||||    
T  25488693 aacaat 25488698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 25384840 - 25384952
Alignment:
Q  7 gaaagattctcaacatagagtttagaaagaaattcatgttctcaatctatcaaactacaagtaccaaagttaccctcatcgtgaagacaatgtttacaac 106  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||  |||||| ||||||| ||||| |||||||||||||||||||    
T  25384840 gaaagaatctcaacatagagtttagaaagaaattcgtgttcttaatccatcaaactactggtaccatagttaccgtcatcctgaagacaatgtttacaac 25384939  T
Q  107 aattctgagacat 119  Q
    |||||||||||||    
T  25384940 aattctgagacat 25384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 25385047 - 25385097
Alignment:
Q  369 gacattgtattttaatgtgtaaagatcttctacaacaactactgcgcacag 419  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  25385047 gacattgtattttaatgtgtaaagatcttctacaacatctcctgcgcacag 25385097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 408
Target Start/End: Original strand, 25319118 - 25319157
Alignment:
Q  369 gacattgtattttaatgtgtaaagatcttctacaacaact 408  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  25319118 gacattgtattttaatgtgtaaggatcttctacaacaact 25319157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 408
Target Start/End: Original strand, 25799312 - 25799351
Alignment:
Q  369 gacattgtattttaatgtgtaaagatcttctacaacaact 408  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  25799312 gacattgtattttaatgtgtaaggatcttctacaacaact 25799351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 2517113 - 2517146
Alignment:
Q  245 ggtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||||||||||||||||||||||||||||    
T  2517113 ggtaataatttgagaaaatgaattaattgaatgt 2517146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 3066037 - 3066081
Alignment:
Q  234 atgttgacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    |||||||||  |||||||||||||||||||| |||||||||||||    
T  3066037 atgttgacacaggtaataatttgagaaaatggattaattgaatgt 3066081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 16824393 - 16824427
Alignment:
Q  245 ggtaataatttgagaaaatgaattaattgaatgtg 279  Q
    ||||||||||||||||||||||||| |||||||||    
T  16824393 ggtaataatttgagaaaatgaattatttgaatgtg 16824427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 25385007 - 25385041
Alignment:
Q  252 atttgagaaaatgaattaattgaatgtgagcacct 286  Q
    ||||||||||||||||||||||||||||| |||||    
T  25385007 atttgagaaaatgaattaattgaatgtgatcacct 25385041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 34259854 - 34259817
Alignment:
Q  239 gacattggtaataatttgagaaaatgaattaattgaat 276  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  34259854 gacatcggtaataatttgagaaaatgaaataattgaat 34259817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 367
Target Start/End: Complemental strand, 38487 - 38373
Alignment:
Q  253 tttgagaaaatgaattaattgaatgtgagcacctgtgtcaatattgtttcaatgttgcacaacgaacacaccaatgatcagaagtgtt-gtccttcaaaa 351  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| ||||| |||||||||||||||| |||| |||||||||||||| |||||||||||    
T  38487 tttgagaaaatgaattaattgaatgtgatcaccaatgtcaatattttttcagtgttgcacaacgaaca-accattgatcagaagtgttggtccttcaaaa 38389  T
Q  352 taaacaaagaagcatc 367  Q
    |||| |||||||||||    
T  38388 taaataaagaagcatc 38373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 38309 - 38270
Alignment:
Q  369 gacattgtattttaatgtgtaaagatcttctacaacaact 408  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  38309 gacattgtattttaatgtgtaaggatcttctacaacaact 38270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 13695347 - 13695221
Alignment:
Q  18 aacatagagtttagaaagaaattcatgttctcaatctatcaaactacaagtaccaaagttaccctcatcgtgaagacaatgtttacaacaattctgagac 117  Q
    ||||| ||||| |||||||||||| |||| |||||| |||||| |||||||||||||||||||||| || |  |||| ||| |||||| |||||  ||||    
T  13695347 aacatcgagttgagaaagaaattcctgttttcaatccatcaaattacaagtaccaaagttaccctcgtcctagagaccatgcttacaagaattccaagac 13695248  T
Q  118 atgttggtacttgtagaaagaaaatat 144  Q
     | |||||||||| |||||||||||||    
T  13695247 tttttggtacttgcagaaagaaaatat 13695221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 39459784 - 39459823
Alignment:
Q  239 gacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  39459784 gacattggtaataatttaaggaaatgaattaattgaatgt 39459823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 5461231 - 5461189
Alignment:
Q  236 gttgacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||    
T  5461231 gttgatattggtaataatttgagataataaattaattgaatgt 5461189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 35198287 - 35198251
Alignment:
Q  242 attggtaataatttgagaaaatgaattaattgaatgt 278  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  35198287 attggtcataatttaagaaaatgaattaattgaatgt 35198251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 30162858 - 30162766
Alignment:
Q  9 aagattctcaacatagagtttagaaagaaattcatgttctcaatctatcaaactacaagtaccaaagttaccctcatcgtgaagacaatgttt 101  Q
    |||| ||||||||||||||| ||||||||||| ||| |||||||  || ||||||||||||||||| || | |||||| | ||||||||||||    
T  30162858 aagaatctcaacatagagttcagaaagaaattgatgctctcaatacattaaactacaagtaccaaaatttctctcatcctaaagacaatgttt 30162766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 40826514 - 40826552
Alignment:
Q  238 tgacattggtaataatttgagaaaatgaattaattgaat 276  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  40826514 tgacactggtgataatttgagaaaatgaattaattgaat 40826552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 7139495 - 7139462
Alignment:
Q  244 tggtaataatttgagaaaatgaattaattgaatg 277  Q
    |||||||| |||||||||||||||||||||||||    
T  7139495 tggtaatattttgagaaaatgaattaattgaatg 7139462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 13859519 - 13859556
Alignment:
Q  237 ttgacattggtaataatttgagaaaatgaattaattga 274  Q
    |||||| | |||||||||||||||||||||||||||||    
T  13859519 ttgacactagtaataatttgagaaaatgaattaattga 13859556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 49636880 - 49636846
Alignment:
Q  244 tggtaataatttgagaaaatgaattaattgaatgt 278  Q
    |||||||||||||||||||||||||||||||||||    
T  49636880 tggtaataatttgagaaaatgaattaattgaatgt 49636846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 19730267 - 19730217
Alignment:
Q  240 acattggtaataatttgagaaaatgaattaattgaatgtgagcacctgtgt 290  Q
    |||||| |||||||||||||||||||  ||||||||||||| ||| |||||    
T  19730267 acattgttaataatttgagaaaatgacataattgaatgtgatcacatgtgt 19730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 19750857 - 19750807
Alignment:
Q  240 acattggtaataatttgagaaaatgaattaattgaatgtgagcacctgtgt 290  Q
    |||||| |||||||||||||||||||  ||||||||||||| ||| |||||    
T  19750857 acattgttaataatttgagaaaatgacataattgaatgtgatcacatgtgt 19750807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 31207833 - 31207878
Alignment:
Q  233 tatgttgacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    |||||||||| ||||||| ||||||||||||||  |||||||||||    
T  31207833 tatgttgacaatggtaattatttgagaaaatgacataattgaatgt 31207878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 32166244 - 32166203
Alignment:
Q  237 ttgacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    |||||| ||||||||||||||||||||||  |||||||||||    
T  32166244 ttgacactggtaataatttgagaaaatgacataattgaatgt 32166203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 47542534 - 47542587
Alignment:
Q  238 tgacattggtaataatttgagaaaatgaattaattgaatgtgagcacctgtgtc 291  Q
    ||||| ||||||||||||||||||||||| || |||||||| | ||| ||||||    
T  47542534 tgacactggtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtc 47542587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 18268056 - 18268028
Alignment:
Q  247 taataatttgagaaaatgaattaattgaa 275  Q
    |||||||||||||||||||||||||||||    
T  18268056 taataatttgagaaaatgaattaattgaa 18268028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 21110527 - 21110483
Alignment:
Q  234 atgttgacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||| | ||||||||||||||||||||  |||||||||||    
T  21110527 atgttgacactcgtaataatttgagaaaatgacataattgaatgt 21110483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 278
Target Start/End: Original strand, 34625742 - 34625773
Alignment:
Q  247 taataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||||||||||||||||||||||||||    
T  34625742 taataatttgagaaaatgaattaattgaatgt 34625773  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 6294587 - 6294557
Alignment:
Q  247 taataatttgagaaaatgaattaattgaatg 277  Q
    |||||||||||||||||||||||||||||||    
T  6294587 taataatttgagaaaatgaattaattgaatg 6294557  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 10764140 - 10764099
Alignment:
Q  234 atgttgacattggtaataatttgagaaaatgaattaattgaa 275  Q
    ||||||||| |||||| ||||||| |||||||||||||||||    
T  10764140 atgttgacactggtaaaaatttgaaaaaatgaattaattgaa 10764099  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 18803242 - 18803302
Alignment:
Q  234 atgttgacattggtaataatttgagaaaatgaattaattgaatgtgagcacctgtgtcaat 294  Q
    ||||||| ||||||||| |||||||||||| |  ||||||||||| | ||| |||||||||    
T  18803242 atgttgatattggtaattatttgagaaaattacataattgaatgtaatcacatgtgtcaat 18803302  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 278
Target Start/End: Complemental strand, 32369963 - 32369932
Alignment:
Q  247 taataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||||||||||||||||||||||||||    
T  32369963 taataatttgagaaaatgaattaattgaatgt 32369932  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 24379822 - 24379864
Alignment:
Q  236 gttgacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||    
T  24379822 gttgatattggtaataatctgagaaaatgaattaattggatgt 24379864  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 2796554 - 2796583
Alignment:
Q  247 taataatttgagaaaatgaattaattgaat 276  Q
    ||||||||||||||||||||||||||||||    
T  2796554 taataatttgagaaaatgaattaattgaat 2796583  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 26369491 - 26369450
Alignment:
Q  237 ttgacattggtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||| |||| |||||||||||||||||||| ||||||||    
T  26369491 ttgacatcggtagtaatttgagaaaatgaattatttgaatgt 26369450  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 843200 - 843164
Alignment:
Q  239 gacattggtaataatttgagaaaatgaattaattgaa 275  Q
    |||| |||||||||||||||||||||||||| |||||    
T  843200 gacactggtaataatttgagaaaatgaattatttgaa 843164  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 6440913 - 6440870
Alignment:
Q  234 atgttgacattggtaataatttgagaaaatgaattaattgaatg 277  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||    
T  6440913 atgttaacactggtaataatttgagaaaatgaatttattgaatg 6440870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 26698235 - 26698202
Alignment:
Q  245 ggtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||| ||||||||||||||||||||||||    
T  26698235 ggtaataatctgagaaaatgaattaattgaatgt 26698202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 4769360 - 4769328
Alignment:
Q  246 gtaataatttgagaaaatgaattaattgaatgt 278  Q
    |||||||||||||||||||| ||||||||||||    
T  4769360 gtaataatttgagaaaatgagttaattgaatgt 4769328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 48317604 - 48317636
Alignment:
Q  246 gtaataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||||||||||||||| |||||||||||    
T  48317604 gtaataatttgagaaaatgaaataattgaatgt 48317636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 9878083 - 9878038
Alignment:
Q  247 taataatttgagaaaatgaattaattgaatgtgagcacctgtgtca 292  Q
    |||||||||||||| ||||||||||||||||| | ||| |||||||    
T  9878083 taataatttgagaatatgaattaattgaatgtaatcacttgtgtca 9878038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 28322251 - 28322280
Alignment:
Q  249 ataatttgagaaaatgaattaattgaatgt 278  Q
    ||||||||||||||||||||||||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgt 28322280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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