View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9846_low_1 (Length: 316)
Name: NF9846_low_1
Description: NF9846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9846_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 41118653 - 41118909
Alignment:
| Q |
38 |
cgttggatcatgcaagtctattatatattatggcgaaccaccaccaatcaatttttttctccttttcttattctccctcctcannnnnnnn-atcgatct |
136 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
41118653 |
cgttggatcatgcaagtctattatatataatggcgaaccaccaccaatcaatttttttctccttttcttcttctccctcctcatttttttttatcgatct |
41118752 |
T |
|
| Q |
137 |
tcaatcctctgcataacaacctaaaaaacttttcatccca-tannnnnnnncttcttaatcttcatctcgaacattaaaaatatccattagctcttttaa |
235 |
Q |
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||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
41118753 |
tcaatcctcagcataacaacctaaaaaactcatcatcccagttttttttttcttcttaatcttcatctcgaccattaaaaatatccattaactcttttaa |
41118852 |
T |
|
| Q |
236 |
cttccactcataatttccatccaaacaaacacaaaaataaaatttcttgcataatga |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41118853 |
cttccactcataatttccatccaaacaaacacaaaaacaaaatttcttgcataatga |
41118909 |
T |
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