View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9847_high_17 (Length: 233)
Name: NF9847_high_17
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 35834850 - 35835055
Alignment:
| Q |
13 |
caaagggagggtatctgaattagaaatagcatgaaatatagattactagattaagtcaactgaactgttggacttttaaacttctgaggaaatagcctct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35834850 |
caaagggagggtatctgaattagaaatagcatgaaatatagattactagattaagtcaactgaactgttggacttttaaacttctgaggaaatagcctct |
35834949 |
T |
|
| Q |
113 |
aatttaatctttcaatgaagagatggattaacaaatagggtaaaacagcgaagaatccttacagagattttaagtgattaagtttcccaagatgaggagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35834950 |
aatttaatctttcaatgaagagatggattaacaaatagggtaaaacagtgaagaatccttacagagattttaagtgattaagtttcccaagatgaggagt |
35835049 |
T |
|
| Q |
213 |
caatgt |
218 |
Q |
| |
|
|||||| |
|
|
| T |
35835050 |
caatgt |
35835055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 4971415 - 4971365
Alignment:
| Q |
168 |
tccttacagagattttaagtgattaagtttcccaagatgaggagtcaatgt |
218 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| | ||||| |||||| |
|
|
| T |
4971415 |
tccttacagagattttaagtgacttagtttcccaagctcaggagccaatgt |
4971365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 4989324 - 4989274
Alignment:
| Q |
168 |
tccttacagagattttaagtgattaagtttcccaagatgaggagtcaatgt |
218 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| | ||||| |||||| |
|
|
| T |
4989324 |
tccttacagagattttaagtgacttagtttcccaagctcaggagccaatgt |
4989274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University