View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_high_2 (Length: 441)
Name: NF9847_high_2
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 31443668 - 31443930
Alignment:
| Q |
1 |
tagtgttgttgatggagtgtttgtgattggaagtgatagttttgttgagagaaggaaggtagagtgactgaatgaagcattttggttgttgagttcttag |
100 |
Q |
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| T |
31443668 |
tagtgttgttgatggagtgtttgtgattggaagtgatagttttgttgagagaaggaaggtagagtgattgaatgaagcattttggttgttgagttcttag |
31443767 |
T |
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| Q |
101 |
tgtgagccagaggaagaggatggtgaggcctgtgctggtgatgaagcttgtgcagcaggtgcagcagttgatgcggggttcccgcgcgggccgcgccatc |
200 |
Q |
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| T |
31443768 |
tgtgagccagaggaagaggatggtgaggcctgtgctggtgatgaagcttgtgcagcaggtgcagcagttgatgcggggttcccgcgcgggccgcgccatc |
31443867 |
T |
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| Q |
201 |
tatggtggttggttagttagtggtgatagaggatgaatgatgaagaagaataataacaagaag |
263 |
Q |
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| T |
31443868 |
tacggtggttggtttgttagtggtgatagaggatgaatgatgaagaagaataataacaagaag |
31443930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 320 - 435
Target Start/End: Original strand, 31443980 - 31444095
Alignment:
| Q |
320 |
ctcttgtgatggttttggaatatgaaattatgtgtcctttacaagtttgttgatttttcttttcttcttttgagggtaaaaccaatctatgtcatacatg |
419 |
Q |
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| T |
31443980 |
ctcttgtgatggttttggaatatgaaattatgtgtcctttacaagattgttgatttttcttttcttcttttgagggtaaaaccaatctatgtcatacatg |
31444079 |
T |
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| Q |
420 |
tattacatgatggatg |
435 |
Q |
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| T |
31444080 |
tattacatgatggatg |
31444095 |
T |
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