View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_high_7 (Length: 364)
Name: NF9847_high_7
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 34092726 - 34092365
Alignment:
| Q |
1 |
aaacgttgaagtttcatgttcgaacccatgaataaagatgattaacctatcaatattattattgaaatttgaattaggatgaactataaaatatctcact |
100 |
Q |
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| T |
34092726 |
aaacgttgaagtttcatgttcgaacctatgaataaaggtgattaacctatcaatattattattgaaatttgaattaggacgaactataaaatatctcact |
34092627 |
T |
|
| Q |
101 |
ttataaatcagttttttaacgagcaattataattaatttaaaaaatcttttattgtaggcttgttaaagannnnnnnaaaaccaatattgatgttttaat |
200 |
Q |
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| T |
34092626 |
ttataaatcagttttttaacgagcaattataattaatttaaaaaatcttttattgtaggcttgttaaagatttttttaaaaccaattttgatgttttaat |
34092527 |
T |
|
| Q |
201 |
taaatttgaaagatattttnnnnnnncgatgttatgttaaagatgaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaa |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092526 |
taaatttgaaagatattttaaaaaaacgatgttatgttaaagattaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaa |
34092427 |
T |
|
| Q |
301 |
aacttagtctgtatatgatgtgatttgttttcaaaggagattgtatatgatgtgatgtccat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092426 |
aacttagtctgtatatgatgtgatttgttttcaaaggagattgtatatgatgtgatgtccat |
34092365 |
T |
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