View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9847_low_13 (Length: 346)
Name: NF9847_low_13
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 31651701 - 31652039
Alignment:
| Q |
8 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31651701 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
31651800 |
T |
|
| Q |
108 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31651801 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatga |
31651900 |
T |
|
| Q |
208 |
tagctattaaccaaaatgtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaacttttacctcatgtctatgac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31651901 |
tagctattaaccaaaatgtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaacttttacctcatgtctatgac |
31652000 |
T |
|
| Q |
308 |
catcataatcatcatagttaatatgcatcaccatttcac |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652001 |
catcataatcatcatagttaatatgcatcaccatttcac |
31652039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 219497 - 219172
Alignment:
| Q |
16 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
115 |
Q |
| |
|
|||||||| || |||||||| |||||||||| || ||| ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
219497 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
219398 |
T |
|
| Q |
116 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatgatagctatt |
215 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
219397 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
219298 |
T |
|
| Q |
216 |
aaccaaaat---gtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaacttttacctcatgtctatgaccatca |
312 |
Q |
| |
|
||||||||| |||||| |||| || |||||||||||||||||||| | ||||||||| |||| |||||| || | ||||||||||||||||| |
|
|
| T |
219297 |
aaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgtttttaacaaccttaataacatgtctatgaccatca |
219198 |
T |
|
| Q |
313 |
taatcatcatagttaatatgcatcac |
338 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
219197 |
taatcatcatagtttatatgcatcac |
219172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 272
Target Start/End: Complemental strand, 49630739 - 49630519
Alignment:
| Q |
52 |
ttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
151 |
Q |
| |
|
|||||||| | ||| |||||||| || | |||||||||||||| |||||||| ||||| ||| || || | ||||| ||||||| ||||||||| | |
|
|
| T |
49630739 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctg |
49630640 |
T |
|
| Q |
152 |
gagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatgatagctattaaccaaaatgtccattttatcatcttccaaagaatc |
251 |
Q |
| |
|
||||||| |||||||||||||| | | |||||||||||||||||| ||||| || || ||||| |||| || | |||||| |||||| | ||||| || |
|
|
| T |
49630639 |
gagcaaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccatgatctgcattttgtcatctacaaaagagtc |
49630540 |
T |
|
| Q |
252 |
cttaaaccaatgatgcaaagg |
272 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
49630539 |
cttaaaccaatcatgcaaagg |
49630519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University