View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9847_low_18 (Length: 282)
Name: NF9847_low_18
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 42003763 - 42004017
Alignment:
| Q |
18 |
accaacacatgtatcttctagtaaaacatacacaatgtactatacgttactttcaaagtcggtaacacaacatatgtcttaattatatatgcggacaagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42003763 |
accaacacatgtatcttctagtaaaacatacacaatgtactatacgttactttcaaagttggtaacacaacatatgtcttaattatatatgtggacaagt |
42003862 |
T |
|
| Q |
118 |
catatatgtccacattccaatatttgagtacctggctgaaacatattatgactctacaacttcatcatacaaaaataaagcattgattaaagtttggttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42003863 |
catatatgtccacattccaatatttgagtacctggatgaaacatattatgactctacaacttcatcatacaaaaataaagcattgattaaagtttggttg |
42003962 |
T |
|
| Q |
218 |
atcaaatgtatcaaacctacttcacaaaagttgtaacaatttacataaccctttg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42003963 |
atcaaatgtatcaaacctacttcacaaaagttgtaacaatttacataaccctttg |
42004017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 42012587 - 42012722
Alignment:
| Q |
125 |
gtccacattccaatatttgagtacctggctgaaacatattatgactctacaacttcatcatacaaaaataaagcattgattaaagtttggtt-gatcaaa |
223 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||| | ||| ||||||||||| |||||||| ||| ||||||||| || |||||| | | ||| |
|
|
| T |
42012587 |
gtccacatttcaatatttgagtacctagatgaaacatact---actatacaacttcattgtacaaaaagaaaacattgattacagcttggttggttaaaa |
42012683 |
T |
|
| Q |
224 |
tgtatcaaac--ctacttcacaaaagttgtaacaattta |
260 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42012684 |
agtttcaaaccactacttcactaaagttgtaacaattta |
42012722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University