View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9847_low_19 (Length: 281)
Name: NF9847_low_19
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 35329315 - 35329569
Alignment:
| Q |
9 |
tggtgttaatccttaatttaaatgctgattatacattacacatttgcgtcaactggatattgcgcagggccaggggacaacttgggggattggaaactag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35329315 |
tggtgttaatccttaatttaaatgctgattatacattacacatttgcatcaactggatattgggcagggccaggggacaacttgggggattggaaactag |
35329414 |
T |
|
| Q |
109 |
agaagctgcctacttttgagggagatctgtgagtcttcaccaatggcaccaaagactgcactacatctgccatgagaggcctataatctgcttctggttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35329415 |
agaagctgcctacttttgagggagatctgtgagtcttcaccaatggcaccaaagactgcactacatctgccatgagaggcctataatctgcttctggttg |
35329514 |
T |
|
| Q |
209 |
cacacacatcgtcgcaatcgctgctacctggataacatctttcattgagtactgt |
263 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35329515 |
cacacacattgtcgcaatcgccgctacctggataacatctttcattgagtactgt |
35329569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University