View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_low_20 (Length: 272)
Name: NF9847_low_20
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 2097053 - 2097324
Alignment:
| Q |
1 |
ccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaattccaaatggtc |
100 |
Q |
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| T |
2097053 |
ccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaattccaaatggtt |
2097152 |
T |
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| Q |
101 |
cacacaacaacgtgccaaact-aaagccagaccaaaccttggtttttcttagacctaaaactcgtnnnnnnnncctcaaaaactccttcagataaagagc |
199 |
Q |
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| T |
2097153 |
cacacaacaacgtgccaaactaaaagccagaccaaactttggtttttcttagacctaagactcgtaaaaaaaa-ctcaaaaactccttcagataaagagc |
2097251 |
T |
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| Q |
200 |
ctttgaaactcccacatgattaatcttcagaattgactctatttctagctagcatccgtctccatgttctcct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2097252 |
ctttgaaactcccacatgattaatcttcagaattgactctatttctagctagcatctgtctccatgttctcct |
2097324 |
T |
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