View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_low_22 (Length: 252)
Name: NF9847_low_22
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9832329 - 9832105
Alignment:
| Q |
1 |
tcatcacaaatagcaacaatagaatccttgagagtgatactattaataacattattaggaaaatacttagtatattgaagtgaaagagatttatcacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832329 |
tcatcacaaatagcaacaatagaatccttgagagtgatactattaataacattattaggaaaatacttagtatattgaagtgaaagagatttatcacaaa |
9832230 |
T |
|
| Q |
101 |
caacaagctcccaaagtttcttccctctagcatcaagaattggtctagaacaaaaatccaactcccagcttaatatactgtcaggatcagcttctgggtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832229 |
caacaagctcccaaagtttcttccctctagcatcaagaattggtctagaacaaaaatccaactcccagcttaatatactgtcaggatcagcttctgggtc |
9832130 |
T |
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| Q |
201 |
aagataacatgtttcagcagttggg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
9832129 |
aagataacatgtttcagcagttggg |
9832105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 44149148 - 44149365
Alignment:
| Q |
1 |
tcatcacaaatagcaacaatagaatccttgagagtgatactattaataacattattaggaaaatacttagtatattgaagtgaaagagatttatcacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44149148 |
tcatcacaaatagcaacaatagaatccttgagagtgatacagttagtaacattattaggaaaatacttagtatattgaagtgaaagagatttatcacaaa |
44149247 |
T |
|
| Q |
101 |
caacaagctcccaaagtttcttccctctagcatcaagaattggtctagaacaaaaatccaactcccagcttaatatactgtcaggatcagcttctgggtc |
200 |
Q |
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| T |
44149248 |
caacaagctcccaaattttctttcctctaacatcaagaattggtctagaac-aaaatccaactcccagcttaatatgctatcaacatcggcttttgggtt |
44149346 |
T |
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| Q |
201 |
aagataacatgtttcagca |
219 |
Q |
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|| |||||||||||||||| |
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| T |
44149347 |
aaaataacatgtttcagca |
44149365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45665244 - 45665461
Alignment:
| Q |
1 |
tcatcacaaatagcaacaatagaatccttgagagtgatactattaataacattattaggaaaatacttagtatattgaagtgaaagagatttatcacaaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45665244 |
tcatcacaaatagcaacaatagaatccttgagagtgatacagttagtaacattattaggaaaatacttagtatattgaagtgaaagagatttatcacaaa |
45665343 |
T |
|
| Q |
101 |
caacaagctcccaaagtttcttccctctagcatcaagaattggtctagaacaaaaatccaactcccagcttaatatactgtcaggatcagcttctgggtc |
200 |
Q |
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||||||||||||||| |||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||| || | || ||| |||| ||||| |
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| T |
45665344 |
caacaagctcccaaattttctttcctctaacatcaagaattagtctagaac-aaaatccaactcccagcttaatatgctattagcatcggcttttgggtt |
45665442 |
T |
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| Q |
201 |
aagataacatgtttcagca |
219 |
Q |
| |
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|| |||||||||||||||| |
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| T |
45665443 |
aaaataacatgtttcagca |
45665461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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