View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_low_24 (Length: 250)
Name: NF9847_low_24
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 47711954 - 47711712
Alignment:
| Q |
1 |
tgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47711954 |
tgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacaggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgccaca |
47711855 |
T |
|
| Q |
101 |
tcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaatagaaatatagtcatctctgataactaagccagcccctagaagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47711854 |
tcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaatagaaatatagtcatctctgataactaagccagcccctagaagag |
47711755 |
T |
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| Q |
201 |
caatagaagtaatgaccatgatcaaaattgatgtccatctcat |
243 |
Q |
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| T |
47711754 |
caatagaagtaatgaccatgatcaaaattggtgtccatttcat |
47711712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 32885582 - 32885453
Alignment:
| Q |
32 |
cttgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcac |
131 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32885582 |
cttgatgatagaatatcacgggtatcaaaaaagacattgtcatcgtcatctgtttcttcctctgccacatcatttctctcattatcatcctcagattcac |
32885483 |
T |
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| Q |
132 |
ttgcacttccttctgaattaaaaatagaaa |
161 |
Q |
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| T |
32885482 |
ttgcacttccttctgaattaaaaatagaaa |
32885453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32885643 - 32885611
Alignment:
| Q |
1 |
tgcatcattatcagatgagaaagatgaaactct |
33 |
Q |
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| T |
32885643 |
tgcatcattatcagatgagaaagatgatactct |
32885611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 45603803 - 45603720
Alignment:
| Q |
160 |
aatatagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattgatgtccatctcat |
243 |
Q |
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||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
45603803 |
aatatagtcatctgtgaggactaaaccagcccctagaagagcaatagatgtaatgaccatgatcaaaattggtgtccatttcat |
45603720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 24481296 - 24481169
Alignment:
| Q |
34 |
tgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcactt |
133 |
Q |
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|||||||| || |||||||| ||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24481296 |
tgatgatataaaatcacgggtgtcaaaaaagggggtatcatcatcatctgtttcttcctctgctgcatcatttctctcattatcatcctcagacccactt |
24481197 |
T |
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| Q |
134 |
gcacttccttctgaattaaaaatagaaa |
161 |
Q |
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||||| | |||| ||||||||| |||| |
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| T |
24481196 |
gcactaacctctggattaaaaattgaaa |
24481169 |
T |
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