View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_low_29 (Length: 229)
Name: NF9847_low_29
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 2392940 - 2393063
Alignment:
| Q |
6 |
acctgtcaccagggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgacaagactccagtgtagtttgtctttcctgttaca |
105 |
Q |
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| T |
2392940 |
acctgtcactcgggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgataagactccagtgtagttcgtctttcctgtcaca |
2393039 |
T |
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| Q |
106 |
aaaagaaattctgaaacctgaata |
129 |
Q |
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| T |
2393040 |
aaaagaaattgtgaaacctgaata |
2393063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 2800932 - 2800722
Alignment:
| Q |
6 |
acctgtcaccagggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgacaagactccagtgtagtttgtctttcctgttaca |
105 |
Q |
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||||||||| || || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800932 |
acctgtcactagcgtacgcaaaggaagcagccattcattgtagaccttgtttaaactgctcctcgacaagactccagtgtagtttgtctttcctgttaca |
2800833 |
T |
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| Q |
106 |
aaaagaaattctgaaacctgaataatacttcaattttgataaaatttgagaactactaattattaaaccactatccaggtaaaaatatttctgtttagga |
205 |
Q |
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| T |
2800832 |
aagcgtaattgtgaaactttaattatactttaatttagat--cgtctcgcaactagtaattattaaaccaaaacccaggaaaaatcatttctgcttagga |
2800735 |
T |
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| Q |
206 |
acaattaacaatt |
218 |
Q |
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| T |
2800734 |
acaattaacaatt |
2800722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 2393062 - 2393124
Alignment:
| Q |
166 |
tattaaaccactatccaggtaaaaatatttctgtttaggaacaattaacaattcaagtggccc |
228 |
Q |
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| T |
2393062 |
tattaaaccactatccaggtaaaaatatttctgtttaggaacagttagcaattcaagtggccc |
2393124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 4250246 - 4250036
Alignment:
| Q |
6 |
acctgtcaccagggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgacaagactccagtgtagtttgtctttcctgttaca |
105 |
Q |
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||||||||| || || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4250246 |
acctgtcactagcgtacgcaaaggaagcagccattcattgtagaccttgtttaaactgctcctcgacaagactccagtgtagtttgtctttcctgttaca |
4250147 |
T |
|
| Q |
106 |
aaaagaaattctgaaacctgaataatacttcaattttgataaaatttgagaactactaattattaaaccactatccaggtaaaaatatttctgtttagga |
205 |
Q |
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||| |||| |||||| | ||| |||||| ||||| ||| || | ||||| |||||||||||||| | ||||| |||| |||||||| |||||| |
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| T |
4250146 |
aaacataattgtgaaactttaattatactttaatttagat--catctcgcaactagtaattattaaaccaaaacccaggaaaaattatttctgcttagga |
4250049 |
T |
|
| Q |
206 |
acaattaacaatt |
218 |
Q |
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||||||||||||| |
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|
| T |
4250048 |
acaattaacaatt |
4250036 |
T |
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