View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_low_3 (Length: 450)
Name: NF9847_low_3
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 51827232 - 51826787
Alignment:
| Q |
18 |
ttattgctttcatgcgctccttttcttttgctaaggaagacactcaagcaatctg--------------------ctatttccataagtatgaatttgat |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
51827232 |
ttattgctttcatgcgctccttttcttttgctaaggaagacactcaagcaatctgggtaataaaaaatagaaattctatttccattagtatgaatttgat |
51827133 |
T |
|
| Q |
98 |
ctctaatcataaattgtattcacaatagcgttttttccttgagtgatctatcttaccgtgacaataggccaatctgcctcaattttttatactc---att |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51827132 |
ctctaatcataaattgtattcacaatagcgttttttccttgagtaatctatcttaccgtgacaataggccaatctgcctcaattttttatactcctcatt |
51827033 |
T |
|
| Q |
195 |
atttttcattctttctgcacggtttccttttcagcttcatctcttgaatgctagctaatacgggtggccttcatgagttgtttcaacatttcttcctgtt |
294 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
51827032 |
atttttcattctttctgcacggtttccttttcaacttcatctcttgaatgctagctaatatgggtggacttcatgagttgtttcaacatttcttcctgtt |
51826933 |
T |
|
| Q |
295 |
gagccatctttgtttgttatggattttgtggcggcccttgagtgggatttagagcaaagttgttcttccacttgagattggagtgctccttccatgcatc |
394 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||| |
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| T |
51826932 |
gagccatctttgtttgttatggattttgtggtggcccttgagtgggatttagagcaaagttgtttttccacttgcgattagagtgctccttccgtgcatc |
51826833 |
T |
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| Q |
395 |
gttggacctgttagaaaaaagattacctctttgataatttcctatg |
440 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51826832 |
gttggacgtgttagaaaaaagattacctctttgataatttcctatg |
51826787 |
T |
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