View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9847_low_30 (Length: 224)

Name: NF9847_low_30
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9847_low_30
NF9847_low_30
[»] chr3 (4 HSPs)
chr3 (50-204)||(41495478-41495632)
chr3 (1-38)||(41495398-41495435)
chr3 (6-38)||(7794176-7794208)
chr3 (6-38)||(7804132-7804164)
[»] chr7 (4 HSPs)
chr7 (1-38)||(13303242-13303279)
chr7 (1-38)||(10882873-10882910)
chr7 (1-38)||(14304083-14304120)
chr7 (1-38)||(16412441-16412478)
[»] chr2 (2 HSPs)
chr2 (1-38)||(31800525-31800563)
chr2 (1-38)||(45086778-45086816)
[»] scaffold0411 (1 HSPs)
scaffold0411 (1-38)||(12635-12672)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-38)||(59958-59995)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-38)||(220660-220697)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-38)||(1153-1190)
[»] chr8 (2 HSPs)
chr8 (1-38)||(19156599-19156636)
chr8 (1-38)||(20255265-20255302)
[»] chr6 (1 HSPs)
chr6 (1-38)||(13602580-13602617)
[»] chr1 (1 HSPs)
chr1 (1-38)||(22019772-22019809)
[»] scaffold0073 (1 HSPs)
scaffold0073 (6-38)||(58901-58933)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 41495478 - 41495632
Alignment:
Q  50 atatagaagactatgaaaatcttattttgactttatataaaacaaaatattgtgtttcggtgtaaaatttctttttaattttggtcttgacttcattata 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41495478 atatagaagactatgaaaatcttattttgactttatataaaacaaaatattgtgtttcggtgtaaaaattctttttaattttggtcttgacttcattata 41495577  T
Q  150 ttttacaacttaatccttccttgctaataaaagtggaaaaaatgtgtccgccctt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41495578 ttttacaacttaatccttccttgctaataaaagtggaaaaaatgtgtccgccctt 41495632  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41495398 - 41495435
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  41495398 atattcaattgacaattttaataccttgttatcatcaa 41495435  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 7794208 - 7794176
Alignment:
Q  6 caattgacaattttaataccttattatcatcaa 38  Q
    |||||||||||||||||||||| ||||||||||    
T  7794208 caattgacaattttaataccttgttatcatcaa 7794176  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 7804164 - 7804132
Alignment:
Q  6 caattgacaattttaataccttattatcatcaa 38  Q
    |||||||||||||||||||||| ||||||||||    
T  7804164 caattgacaattttaataccttgttatcatcaa 7804132  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13303242 - 13303279
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  13303242 atatccaattgacaattttaataccttattatcatcaa 13303279  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10882910 - 10882873
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  10882910 atatccaattgacaattttaataccttgttatcatcaa 10882873  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14304120 - 14304083
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  14304120 atattcaattgacatttttaataccttgttatcatcaa 14304083  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16412441 - 16412478
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||||||||||| | |||||||||||||||||||||||    
T  16412441 atattcaattgatatttttaataccttattatcatcaa 16412478  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31800563 - 31800525
Alignment:
Q  1 atattcaattgacaatttt-aataccttattatcatcaa 38  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  31800563 atattcaattgacaatttttaataccttattatcatcaa 31800525  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45086816 - 45086778
Alignment:
Q  1 atattcaattgacaatttt-aataccttattatcatcaa 38  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  45086816 atattcaattgacaatttttaataccttattatcatcaa 45086778  T

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Target: scaffold0411 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12635 - 12672
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  12635 atatccaattgacaattttaataccttgttatcatcaa 12672  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 59958 - 59995
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  59958 atattcaattgacatttttaataccttgttatcatcaa 59995  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 220660 - 220697
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  220660 atatccaattgacaattttaataccttgttatcatcaa 220697  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1153 - 1190
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||||||||||| | |||||||||||||||||||||||    
T  1153 atattcaattgatatttttaataccttattatcatcaa 1190  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19156599 - 19156636
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  19156599 atatccaattgacaattttaataccttgttatcatcaa 19156636  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20255302 - 20255265
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  20255302 atatccaattgacaattttaataccttgttatcatcaa 20255265  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13602580 - 13602617
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13602580 atatccaattgacaattttaataccttgttatcatcaa 13602617  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22019772 - 22019809
Alignment:
Q  1 atattcaattgacaattttaataccttattatcatcaa 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  22019772 atatccaattgacaattttaataccttgttatcatcaa 22019809  T

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Target: scaffold0073 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 58901 - 58933
Alignment:
Q  6 caattgacaattttaataccttattatcatcaa 38  Q
    |||||||||||||||||||||| ||||||||||    
T  58901 caattgacaattttaataccttgttatcatcaa 58933  T

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