View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9847_low_7 (Length: 382)
Name: NF9847_low_7
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 7200540 - 7200179
Alignment:
| Q |
7 |
gaatcaaccgggattcaatattatcatacattcattatcaactgaaattgcatatagtttcgaaaaacataaagatctagaaagcaaagatctttattgg |
106 |
Q |
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| T |
7200540 |
gaatcaaccgggattcaatattatcatacattcattatcaactgaaattgcatatagtttcgaaaaacataaagatctagaaagcaaagatctttattgg |
7200441 |
T |
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| Q |
107 |
atagaaggtagtgtggaaatatttatatatttaatgggaatggagatgaccttattcagtttagcaattaaaatatgttagaaagctgaaagtcgcatta |
206 |
Q |
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| T |
7200440 |
atagaaggtagtgtggaaatatttatatatttaatgggaatggagatgaccttattcagtttagcaattaaaatatgttagaaagatgaaagtagcatta |
7200341 |
T |
|
| Q |
207 |
attgtagttttccgctagccgctttaatagcggaaactttgggttggctatgttgtagtctgcagcaccttcattctgttgggaatgacggtttgtgttt |
306 |
Q |
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| T |
7200340 |
attgtagttttccgctagccgctttaatagcggaaactttgggttgcctatgttgtagtctgcagcaccttcattctgttgggaatgacggtttgtgttt |
7200241 |
T |
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| Q |
307 |
agtcccacgttgtctaaagatatgacatatgtagttctcatatcctaaccactgtgtatgat |
368 |
Q |
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| T |
7200240 |
agtcccacgttgtctaaagatatgacatatgtagttctcatatcctaaccactgtgtatgat |
7200179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 7207099 - 7206896
Alignment:
| Q |
7 |
gaatcaaccgggattcaatattatcatacattcattatcaactgaaattgcatatagtttcgaaaaacataaa-gatctagaaagcaaagatctttattg |
105 |
Q |
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||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
7207099 |
gaatcaacctggattcaatactatcatacattcattataaactgaaattgcatgtagtttcaaaaaacataaaagatctagaaagcaaagatctttattc |
7207000 |
T |
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| Q |
106 |
gat-agaaggtagtgtggaaatatttatatatttaatgggaatggagatgaccttattcagtttagcaattaaaatatgttagaaagctgaaagtcgcat |
204 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| | |
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| T |
7206999 |
gatcagaaggtagtgtggaaatatttatgtatttaatgggaatggagatgacattattcagtttagcaattaaaatatgttaaaaagctgaaagccgcgt |
7206900 |
T |
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| Q |
205 |
taat |
208 |
Q |
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|||| |
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| T |
7206899 |
taat |
7206896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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