View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9847_low_8 (Length: 382)
Name: NF9847_low_8
Description: NF9847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9847_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 27589249 - 27589615
Alignment:
| Q |
10 |
aaatcaagataggctacttcatcatcagcnnnnnnnaaaaatatatcacccttcttccctgctccaataaaccacttaatgtcagataagggtccaacat |
109 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27589249 |
aaatcaagataggctagttcatcatcatcttttttaaaaaatatatcacccttctcccctgctccaataaaccgcttaatgtcagataagggtccaacat |
27589348 |
T |
|
| Q |
110 |
cgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaagtggtctttaaataatgggagatcataattac |
209 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
27589349 |
cgaagagcttaatccatgattcattgaccccgggctcacccaacattgatattgatatgtggaaagaagtggtctttacataacgggagatcataattac |
27589448 |
T |
|
| Q |
210 |
atgcccatttaacaccgctaagactctataaacccattttaaattatacaattctgagggaatgagagcggtaacaggcacttcagtgctcaagttaaat |
309 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27589449 |
atgcccatttaacaccgccaagtctctatcaacccattttaaattaaacaattctgagggaatgagagcggtaacagacacttcagtgctcaagttaaat |
27589548 |
T |
|
| Q |
310 |
gataccacatatgtttcagaatctgtttttcccaaccaatggcacactccatccaagtgaacaccaa |
376 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27589549 |
gataccacatatgtttcagaatctgttattcccaaccaatggcacactccatccaagtgaactccaa |
27589615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 27595292 - 27595661
Alignment:
| Q |
8 |
ttaaatcaagataggctacttcatcatcagcnnnnnnnaaaaatatatcacccttcttccctgctccaataaaccacttaatgtcagataagggtccaac |
107 |
Q |
| |
|
||||||||| ||| || | |||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27595292 |
ttaaatcaaaatatgcgagttcatcatcagctttttttaaaaatatatcggccttcctccctgctccaataaaccccttaatgtcagataagggtccaac |
27595391 |
T |
|
| Q |
108 |
atcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaagtggtctttaaataatgggagatcataatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
27595392 |
atcgaagagcttaatccatgattcattgaccccgggctcacccaacattgatattgatatgtggaaagaagtggtcttcacataacgggagatcataatt |
27595491 |
T |
|
| Q |
208 |
acatgcccatttaacaccgctaagactctataaacccat------tttaaattatacaattctgagggaatgagagcggtaacaggcacttcagtgctca |
301 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||| | | || || || |||||||||||| | |||| ||||||||| ||||||||||||| |
|
|
| T |
27595492 |
acatgcccatttaacaccgccaagtctctattaacatgttgttgatctagatcatgcaattctgagggcagtagagtggtaacaggtacttcagtgctca |
27595591 |
T |
|
| Q |
302 |
agttaaatgataccacatatgtttcagaatctgtttttcccaaccaatggcacactccatccaagtgaac |
371 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| | | |||||||||||||||||||||||||||| |
|
|
| T |
27595592 |
agttaaatgataccacatatgtttcacaatcttctttgctccaccaatggcacactccatccaagtgaac |
27595661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 367
Target Start/End: Original strand, 27716990 - 27717263
Alignment:
| Q |
97 |
aagggtccaacatcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtgga---aagaagtggtctttaaataat |
193 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||| | ||| || || |||||||| || |||| |||| ||| | ||||||| |||||| ||||| |
|
|
| T |
27716990 |
aagggaccaatatcaaagagcttaatccatgattccttgacaccaggttcacccaaaatggatattgatgtgtacaaagaagaagtagtctttgcataat |
27717089 |
T |
|
| Q |
194 |
gggagatcataattacatgcccatttaacaccgctaagactctataaacccattttaaattatacaattctgagggaatgagagcggtaacaggcacttc |
293 |
Q |
| |
|
||||||||| |||||| ||||||| || || ||| |||||||||||| ||||||| || ||| || ||||| | ||||| |||||| || || || |
|
|
| T |
27717090 |
ttgagatcatagcaacatgctcatttaagactgccaagtatctataaacccactttaaatcatgcaaatcagagggtaagagagtggtaactggtacctc |
27717189 |
T |
|
| Q |
294 |
agtgctcaagttaaatgataccacatatgtttcagaatctgtttttcccaaccaatggcacactccatccaagt |
367 |
Q |
| |
|
| ||||||| ||||| || ||||||||||||||| | || |||| ||| ||||||| || ||||||| ||||| |
|
|
| T |
27717190 |
attgctcaaattaaacgacaccacatatgtttcacattccgtttccccccaccaatgacaaactccattcaagt |
27717263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 27724312 - 27724389
Alignment:
| Q |
101 |
gtccaacatcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaag |
178 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| || ||||| | ||||| ||||||||||||||||| |
|
|
| T |
27724312 |
gtccaacatcgaaaagcttaatccatgattcctcgacaccgggttctcccaaaactgatattgatatgtggaaagaag |
27724389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 27735553 - 27735631
Alignment:
| Q |
100 |
ggtccaacatcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaag |
178 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| || || || ||||| | ||||| |||||||||||| |||| |
|
|
| T |
27735553 |
ggtccaacatcgaaaagcttaatccatgattcattgacaccaggttctcccaaaactgatattgatatgtggaatgaag |
27735631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 27724257 - 27724285
Alignment:
| Q |
46 |
aaaaatatatcacccttcttccctgctcc |
74 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27724257 |
aaaaatatatcacccttcttccctgctcc |
27724285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 88 - 367
Target Start/End: Original strand, 19225428 - 19225707
Alignment:
| Q |
88 |
atgtcagataagggtccaacatcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaagtggtcttta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| | ||| ||| |||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
19225428 |
atgtcagataagggtccaacatcgaagagcttagtccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaagtggtcttta |
19225527 |
T |
|
| Q |
188 |
aataatgggagatcataattacatgcccatttaacaccgctaagactctataaacccattttaaattatacaattctgagggaatgagagcggtaacagg |
287 |
Q |
| |
|
| ||| ||||||||| |||||||||||||||||| | ||| ||||| |||||| ||||| || ||| ||| || ||||||| ||||||||| |
|
|
| T |
19225528 |
cacaatttgagatcatagcgacatgcccatttaacacctccaagtgtctattgacccatcctaaatcatgcaaatctacaggtatgagagtggtaacagg |
19225627 |
T |
|
| Q |
288 |
cacttcagtgctcaagttaaatgataccacatatgtttcagaatctgtttttcccaaccaatggcacactccatccaagt |
367 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| ||| || ||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
19225628 |
aatttcattgctcaagttaaatgataccacatatgattcgctatttgtttccccctaccaatggcacactccattcaagt |
19225707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 19219171 - 19219287
Alignment:
| Q |
88 |
atgtcagataagggtccaacatcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaagtggtcttta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| | ||| ||| | |||||||| ||||||| |||||||||||| |||||||| |||| |
|
|
| T |
19219171 |
atgtcagataagggtccaacatcgaagagcttagtccatgattccttgacaccgagttcacccaaaattgatattgatatgtggaacgaagtggttttta |
19219270 |
T |
|
| Q |
188 |
aataatgggagatcata |
204 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
19219271 |
cacaatttgagatcata |
19219287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 19221594 - 19221504
Alignment:
| Q |
89 |
tgtcagataagggtccaacatcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaagt |
179 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| |||||||||| | || || |||||||||| ||||||| |||||| ||| ||||||| |
|
|
| T |
19221594 |
tgtcggataagggtccaacatcaaagagcttagtccatgattccttcacatcgagctcacccaaaattgatattgatatatggtaagaagt |
19221504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 19221395 - 19221358
Alignment:
| Q |
290 |
cttcagtgctcaagttaaatgataccacatatgtttca |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19221395 |
cttcagtgctcaagttaaatgataccacatatgattca |
19221358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 14681969 - 14682047
Alignment:
| Q |
100 |
ggtccaacatcgaagagcttaatccatgattcatcgaccccgggctcacccaacattgatagtgatatgtggaaagaag |
178 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| ||| ||||| || ||||| | ||||| ||||||| ||||||||| |
|
|
| T |
14681969 |
ggtccaacatcgaaaagcttagtccatgattcattgacaccgggttctcccaaaactgatattgatatgcggaaagaag |
14682047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University