View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9848_high_6 (Length: 248)

Name: NF9848_high_6
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9848_high_6
NF9848_high_6
[»] chr5 (4 HSPs)
chr5 (15-224)||(41361399-41361608)
chr5 (17-224)||(41037981-41038190)
chr5 (15-224)||(34153853-34154056)
chr5 (129-187)||(795306-795364)
[»] chr3 (2 HSPs)
chr3 (19-226)||(53833602-53833796)
chr3 (176-224)||(2390455-2390503)
[»] chr4 (4 HSPs)
chr4 (89-227)||(6804537-6804674)
chr4 (20-222)||(1392930-1393132)
chr4 (46-141)||(6800180-6800275)
chr4 (15-71)||(6800276-6800332)
[»] chr2 (3 HSPs)
chr2 (16-227)||(13310369-13310581)
chr2 (93-224)||(10041094-10041226)
chr2 (93-224)||(10099115-10099247)
[»] chr1 (2 HSPs)
chr1 (29-227)||(21430870-21431068)
chr1 (29-161)||(2114823-2114955)
[»] scaffold0635 (1 HSPs)
scaffold0635 (93-224)||(5844-5976)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 41361399 - 41361608
Alignment:
Q  15 ggagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccga 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  41361399 ggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcagccaaggaccga 41361498  T
Q  115 taagttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa 214  Q
    ||||||| ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41361499 taagttcttcctttcttctttattttactgataattatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa 41361598  T
Q  215 ttttccaaca 224  Q
    ||||||||||    
T  41361599 ttttccaaca 41361608  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 41038190 - 41037981
Alignment:
Q  17 agagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgata 116  Q
    ||||||||||  ||||||||||||||||||||| |||||| ||||| |||||||||||||||||| | |||   ||||||||||||||||||||||||||    
T  41038190 agagcactagctttgaggccaactgtatcaggtcattgacatgtggtggcgaaatgctcttaagctcgatgcaattgcacgcctcagccaacgaccgata 41038091  T
Q  117 agttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattatta--tctttgtttattaattaattctatgtcaa 214  Q
    |  || | |||||||||||||||||| ||||| |||||||| ||  || |  |||||||||||||||||  ||| | ||| |||||||||| | ||||||    
T  41038090 aactctttccttcttctttattttactgagaattatatttacaacagctgctatatttcttgattattatttctattttttttaattaattttgtgtcaa 41037991  T
Q  215 ttttccaaca 224  Q
    ||||||||||    
T  41037990 ttttccaaca 41037981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 34154056 - 34153853
Alignment:
Q  15 ggagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccga 114  Q
    ||||||||||||  ||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||   ||||||||||||||      || |    
T  34154056 ggagagcactagctttgaggccaactgcatcaggtcattgacctgtggtggcgaaatgctcttaagcccagtgcaattgcacgcctcagc------ccaa 34153963  T
Q  115 taagttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgttta-ttaattaattctatgtca 213  Q
    |||| |  | | |||||||||||||||| ||| | ||||| ||||||||| |  |||||||||||||||||| | | |||| |||||||||||| |||||    
T  34153962 taagct-tttctttcttctttattttactgaggattatatctataattgctgctatatttcttgattattatttctatttatttaattaattctgtgtca 34153864  T
Q  214 attttccaaca 224  Q
    |||||||||||    
T  34153863 attttccaaca 34153853  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 795364 - 795306
Alignment:
Q  129 cttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatc 187  Q
    ||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||    
T  795364 cttctttatattactgagaattatatttataattgcggtgacatttcttgattattatc 795306  T

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Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 53833602 - 53833796
Alignment:
Q  19 agcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataag 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |       ||  ||||      ||||||||||||||||| |||||||    
T  53833602 agcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaacg-------gcgaaatg------cacgcctcagccaacgatcgataag 53833688  T
Q  119 ttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaatttt 218  Q
    ||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53833689 ttcttcctttcttctttattttactgagaattatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaatttt 53833788  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 2390503 - 2390455
Alignment:
Q  176 ttgattattatctttgtttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||| | | |||||||||||||| | ||||||||||||||||    
T  2390503 ttgattattatttctatttattaattaattatgtgtcaattttccaaca 2390455  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 6804674 - 6804537
Alignment:
Q  89 gtttgcacgcctcagccaacgaccgataagttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatct 188  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||    
T  6804674 gtttgcacgcctcagccaaggaccgataagttcttcctttcttctttattttagtgataattatatttataattgcggtgatatttcttgattattatct 6804575  T
Q  189 ttgtttattaattaattctatgtcaattttccaacaatc 227  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6804574 ttgtttattaattaattctatgtc-attttccaacaatc 6804537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 1393132 - 1392930
Alignment:
Q  20 gcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagt 119  Q
    |||||||  ||||||||||||| || ||||||||||| ||||| |||||||||||||||| || | | | ||||||||| |||| |||||| ||||||||    
T  1393132 gcactagctttgaggccaactgcattaggtgattgacatgtggtggcgaaatgctcttaaacctagtatatttgcacgcttcagtcaacgagcgataagt 1393033  T
Q  120 tcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaattttc 219  Q
    || ||  |||||||||||||||| ||||| ||||||||||||||| |  ||| ||||||||| |||| | | |||||||||||||||| |||||||||||    
T  1393032 tcttcatttcttctttattttactgagaattatatttataattgccgctatacttcttgattgttatttctatttattaattaattctttgtcaattttc 1392933  T
Q  220 caa 222  Q
    |||    
T  1392932 caa 1392930  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 6800275 - 6800180
Alignment:
Q  46 aggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagttcatcccttcttctttatttta 141  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  6800275 aggtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 6800180  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 6800332 - 6800276
Alignment:
Q  15 ggagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaat 71  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6800332 ggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaat 6800276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 13310581 - 13310369
Alignment:
Q  16 gagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgat 115  Q
    |||||| ||||  ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||   |||||| |||||| ||||||||||||    
T  13310581 gagagcgctagctttgaggccaactgcatcaggtgattgacctgtggtggtgaaatgctcttaagcccaatacatttgcatgcctcatccaacgaccgat 13310482  T
Q  116 aagttcatcccttcttctttattttaccgagaactatat-ttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa 214  Q
    || ||| ||   ||||||||||||||| | ||| ||||| |||||| |||    || ||||||||||  |||   | |||||||||||||||||||||||    
T  13310481 aaattcttcatctcttctttattttactgcgaattatatattataactgctactatgtttcttgatttctattgctatttattaattaattctatgtcaa 13310382  T
Q  215 ttttccaacaatc 227  Q
    |||||||||||||    
T  13310381 ttttccaacaatc 13310369  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 10041094 - 10041226
Alignment:
Q  93 gcacgcctcagccaacgaccgataagttcatcccttcttctttatttta-ccgagaactatatttataattgcggtgatatttcttgattattatctttg 191  Q
    |||| |||||||||| ||||||||||||| ||  |||||||||||||||   || || |||||||| |||||| || ||||||||||||||||     |     
T  10041094 gcacacctcagccaaagaccgataagttcttcatttcttctttattttatatgataattatatttaaaattgctgttatatttcttgattattgatgcta 10041193  T
Q  192 tttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||||| |||||| || |||||||||    
T  10041194 tttattaattaatcctatgttaactttccaaca 10041226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 10099115 - 10099247
Alignment:
Q  93 gcacgcctcagccaacgaccgataagttcatcccttcttctttattttacc-gagaactatatttataattgcggtgatatttcttgattattatctttg 191  Q
    |||| |||||| ||| || |||||||||| ||  |||||||||||||||   || || ||||||||||||||| || ||||||||||||||||     |     
T  10099115 gcacacctcagtcaaagatcgataagttcttcatttcttctttattttatatgataattatatttataattgctgttatatttcttgattattggtgcta 10099214  T
Q  192 tttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||||| |||||| || |||||||||    
T  10099215 tttattaattaatcctatgttaactttccaaca 10099247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 21431068 - 21430870
Alignment:
Q  29 ttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagttcatccctt 128  Q
    ||||||||||||| ||||||| |||||||||||  | ||||||||||||||| ||| | |  ||||| |||||||||||||||||||||| |  ||  ||    
T  21431068 ttgaggccaactgcatcaggtcattgacctgtgatgacgaaatgctcttaagtccagtataattgcatgcctcagccaacgaccgataagcttttct-tt 21430970  T
Q  129 cttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa-ttttccaacaatc 227  Q
    | |||||||||||||||||| ||||| ||||||||| |  |||||| | ||||||||| | | ||||||||||||||||| ||||| |||||||||||||    
T  21430969 cctctttattttaccgagaattatatatataattgctgctatatttttcgattattatttctatttattaattaattctacgtcaatttttccaacaatc 21430870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 2114955 - 2114823
Alignment:
Q  29 ttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagttcatccctt 128  Q
    |||||| |||||| |||||| ||||||| | || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||  ||||||    
T  2114955 ttgaggtcaactgcatcaggcgattgacatatgtcggcgaaatgctcttaagcccaatgtgtttgcacgtcttagccagcgaccgataagtttttccctt 2114856  T
Q  129 cttctttattttaccgagaactatatttataat 161  Q
    |||| |||||||||  |||| ||||| ||||||    
T  2114855 cttcgttattttactaagaattatatgtataat 2114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 5976 - 5844
Alignment:
Q  93 gcacgcctcagccaacgaccgataagttcatcccttcttctttatttta-ccgagaactatatttataattgcggtgatatttcttgattattatctttg 191  Q
    |||| |||||||||| ||||||||||||| ||  |||||||||||||||   || || |||||||| |||||| || ||||||||||||||||     |     
T  5976 gcacacctcagccaaagaccgataagttcttcatttcttctttattttatatgataattatatttaaaattgctgttatatttcttgattattgatgcta 5877  T
Q  192 tttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||||| |||||| || |||||||||    
T  5876 tttattaattaatcctatgttaactttccaaca 5844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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