View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9848_high_8 (Length: 239)
Name: NF9848_high_8
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26316202 - 26316319
Alignment:
| Q |
1 |
tataatttccttaaaaaaggtgagtgtaaagataccaccttatatatttttctctatcaaaatgataatttataattgattagaactctttaatacccgc |
100 |
Q |
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| T |
26316202 |
tataatttccttaaaaaaggtgagtgtaaagataccaccttatatatttttctctatcaaaatgataatttataattgattagaactctttaatacccgc |
26316301 |
T |
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| Q |
101 |
ttgaagtgtccccaaaca |
118 |
Q |
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|||||||||||||||||| |
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| T |
26316302 |
ttgaagtgtccccaaaca |
26316319 |
T |
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Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 26316305 - 26316390
Alignment:
| Q |
137 |
aagtgtccccaaacatgacacagaccacatttgaaaaattcagagttaaaataatgaccaactttaatacataggcccttagttag |
222 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26316305 |
aagtgtccccaaacatgacacacaccacatttgaaaaattcagagttaaaataatgaccaactttaatacataggcccttagttag |
26316390 |
T |
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