View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9848_low_1 (Length: 711)

Name: NF9848_low_1
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9848_low_1
NF9848_low_1
[»] chr6 (4 HSPs)
chr6 (380-701)||(24255977-24256298)
chr6 (18-274)||(24256419-24256675)
chr6 (623-665)||(32534054-32534096)
chr6 (622-663)||(26586833-26586874)
[»] chr1 (5 HSPs)
chr1 (21-270)||(7573242-7573496)
chr1 (108-270)||(3903653-3903814)
chr1 (17-71)||(3903557-3903611)
chr1 (385-455)||(3903943-3904013)
chr1 (593-663)||(18591667-18591737)
[»] chr5 (1 HSPs)
chr5 (623-665)||(7962148-7962190)
[»] chr4 (3 HSPs)
chr4 (620-675)||(10562787-10562842)
chr4 (628-665)||(33100942-33100979)
chr4 (628-665)||(54871836-54871873)
[»] chr7 (2 HSPs)
chr7 (590-660)||(13063285-13063355)
chr7 (623-665)||(40617738-40617780)
[»] chr3 (2 HSPs)
chr3 (623-665)||(22533055-22533097)
chr3 (622-660)||(29310041-29310079)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 380 - 701
Target Start/End: Complemental strand, 24256298 - 24255977
Alignment:
Q  380 gcctgaatcttgtccctaatggaactcctccaacctagttatccatccaagagaaggtacccctcccataaccaacgaacctacgaacattctcatcgaa 479  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24256298 gcctgaatctagtccctaatggaactcctccaacctagttatccgtccaagagaaggtacccctcccattaccaacgaacctacgaacattctcatcgaa 24256199  T
Q  480 ccaccgccctagtcctacgcctacaccctcacgaacaccatccaacctcctccaccacaatgaggaattcctnnnnnnnnnnnnnaccaccaccatattt 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||    
T  24256198 ccaccgccctagtcctacgcctacaccctcacgaacaccatccaacctcctccaccacaatgaggaattcctcccccctccccccaccaccaccatattt 24256099  T
Q  580 ggccacaaaaactcgataccaaagaccctccttatccgtaagcatccaccaacaccatttccctaacaatgctaaattaaattcttccaactgtctgaca 679  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24256098 ggccaccaaaactcgataccaaaggccctccttatctgtaagcatccgccaacaccatttccctaacaatgctaaattaaattcttccaactgtctgaca 24255999  T
Q  680 cctaaaccaccatcgtcctttg 701  Q
    ||||||||||||||||||||||    
T  24255998 cctaaaccaccatcgtcctttg 24255977  T

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Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 24256675 - 24256419
Alignment:
Q  18 ccctctgccgcacaagattatctctagttggtaacctgttgcgtagaagccgccgtgcgaaccaagagaagcggaacctgtttgtgccagatgttatcaa 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||    
T  24256675 ccctccgccgcacaagattatctctagttggtaacctgttgcgcagaagccaccatgcgaaccaagagaagcgggacctgtttgtgccagatgttatcaa 24256576  T
Q  118 ttgaacccttgtcactaggagcgtctgcatctgtgaggtaatgataagccccactgacagagtagcccttaatagagtctagaagccaacaccacctgtc 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  24256575 ttgaatccttgtcactaggagcgtctgcatctgtgaggtaatgataagtcccactaacagagtcgcccttaacagagtctagaagccaacaccacctgtc 24256476  T
Q  218 aaaagcattaatctacaaaagaaagttatataacagagaaacacgttctcgaagagt 274  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24256475 aaaagcattaatctacaaaagaaagttatgtaacagagaaacacgttctcgaagagt 24256419  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 665
Target Start/End: Original strand, 32534054 - 32534096
Alignment:
Q  623 atccaccaacaccatttccctaacaatgctaaattaaattctt 665  Q
    |||||||||||||| |||||||| || ||||||||||||||||    
T  32534054 atccaccaacaccacttccctaataacgctaaattaaattctt 32534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 663
Target Start/End: Original strand, 26586833 - 26586874
Alignment:
Q  622 catccaccaacaccatttccctaacaatgctaaattaaattc 663  Q
    ||||||||||||||| |||||||||||||| | |||||||||    
T  26586833 catccaccaacaccacttccctaacaatgcaacattaaattc 26586874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 7573242 - 7573496
Alignment:
Q  21 tctgccgcacaagattatctctagttggtaacctgttgcgtagaagccgccgtgcgaaccaagaga-----agcggaacctgtttgtgccagatgttatc 115  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||  |||||| ||||||     |||| ||| ||||||||||| || |||||    
T  7573242 tctgccgcacaagattatctctagttgataacctgctgcgtagaagccaccaagcgaacaaagagacctttagcgaaacttgtttgtgccaaatattatc 7573341  T
Q  116 aattgaacccttgtcactaggagcgtctgcatctgtgaggtaatgataagccccactgacagagtagcccttaatagagtctagaagccaacaccacctg 215  Q
     || ||| || ||||| | ||||| | ||||  ||||| ||||||||| |||||||||||| | ||||| |||| ||  || ||||| || | |||| ||    
T  7573342 tatcgaatccctgtcaatgggagcttatgcagttgtgacgtaatgatatgccccactgacataatagcctttaacaggatcaagaagtcagcgccacatg 7573441  T
Q  216 tcaaaagcattaatctacaaaagaaagttatataacagagaaacacgttctcgaa 270  Q
    |||| ||||| |||||| |||| |||||||| |||||||||||||||||||||||    
T  7573442 tcaagagcatcaatctataaaacaaagttatgtaacagagaaacacgttctcgaa 7573496  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 270
Target Start/End: Original strand, 3903653 - 3903814
Alignment:
Q  108 atgttatcaattgaacccttgtcactaggagcgtctgcatctgtgaggtaatgataagccccactgacagagtagcccttaatagagtctagaagccaac 207  Q
    ||||||||||||||| || ||||| ||| ||| | |||| |||| ||| | ||||| | |||||||||||| ||||| |||| |  ||| |||||| |||    
T  3903653 atgttatcaattgaatccctgtcaatag-agcttatgcagctgttaggaagtgatacgtcccactgacagaatagccattaacacggtcaagaagcaaac 3903751  T
Q  208 accacctgtcaaaagcattaatctacaaaagaaagttatataacagagaaacacgttctcgaa 270  Q
     ||||||||||| || || ||||| ||||| |  ||||| ||| ||| |||||| ||||||||    
T  3903752 gccacctgtcaagagtatcaatctgcaaaacagtgttatgtaatagaaaaacacattctcgaa 3903814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 3903557 - 3903611
Alignment:
Q  17 accctctgccgcacaagattatctctagttggtaacctgttgcgtagaagccgcc 71  Q
    |||||||||||||| |||| |||||||||||||||| ||||| | ||||| ||||    
T  3903557 accctctgccgcacgagatcatctctagttggtaacatgttgtgcagaagacgcc 3903611  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 3903943 - 3904013
Alignment:
Q  385 aatcttgtccctaatggaactcctccaacctagttatccatccaagagaaggtacccctcccataaccaac 455  Q
    ||||||||| |||| ||||||||| |||||||||||||| ||||| ||||  || | ||||||| ||||||    
T  3903943 aatcttgtcactaacggaactccttcaacctagttatccgtccaaaagaaaatatctctcccattaccaac 3904013  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 18591667 - 18591737
Alignment:
Q  593 cgataccaaagaccctccttatccgtaagcatccaccaacaccatttccctaacaatgctaaattaaattc 663  Q
    ||||||||||| |||||||||||   |||||||| ||||||||| ||||||||||  |  |||||||||||    
T  18591667 cgataccaaaggccctccttatctacaagcatcctccaacaccacttccctaacagagaaaaattaaattc 18591737  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 623 - 665
Target Start/End: Original strand, 7962148 - 7962190
Alignment:
Q  623 atccaccaacaccatttccctaacaatgctaaattaaattctt 665  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  7962148 atccaccaacaccacttccctaataatgctaaattaaattctt 7962190  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 675
Target Start/End: Complemental strand, 10562842 - 10562787
Alignment:
Q  620 agcatccaccaacaccatttccctaacaatgctaaattaaattcttccaactgtct 675  Q
    ||||||| ||||||||| || |||||||| || ||||||||||||| |||||||||    
T  10562842 agcatcctccaacaccactttcctaacaaagccaaattaaattctttcaactgtct 10562787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 665
Target Start/End: Complemental strand, 33100979 - 33100942
Alignment:
Q  628 ccaacaccatttccctaacaatgctaaattaaattctt 665  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  33100979 ccaacaccacttccctaacaattctaaattaaattctt 33100942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 665
Target Start/End: Original strand, 54871836 - 54871873
Alignment:
Q  628 ccaacaccatttccctaacaatgctaaattaaattctt 665  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  54871836 ccaacaccacttccctaacaatgctaaattaaactctt 54871873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 660
Target Start/End: Complemental strand, 13063355 - 13063285
Alignment:
Q  590 actcgataccaaagaccctccttatccgtaagcatccaccaacaccatttccctaacaatgctaaattaaa 660  Q
    ||||||||||| || |||||||||||  | | ||||| ||||||||| || |||||||||| |||||||||    
T  13063355 actcgataccacaggccctccttatcaatcaacatcctccaacaccacttacctaacaatgataaattaaa 13063285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 665
Target Start/End: Original strand, 40617738 - 40617780
Alignment:
Q  623 atccaccaacaccatttccctaacaatgctaaattaaattctt 665  Q
    |||||||||||||| ||| |||| |||||||||||||||||||    
T  40617738 atccaccaacaccacttctctaataatgctaaattaaattctt 40617780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 665
Target Start/End: Complemental strand, 22533097 - 22533055
Alignment:
Q  623 atccaccaacaccatttccctaacaatgctaaattaaattctt 665  Q
    |||||||||||||||||||| || || ||||||||||||||||    
T  22533097 atccaccaacaccatttccccaataacgctaaattaaattctt 22533055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 660
Target Start/End: Original strand, 29310041 - 29310079
Alignment:
Q  622 catccaccaacaccatttccctaacaatgctaaattaaa 660  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  29310041 catccgccaacaccattttcctaacaatgctaaattaaa 29310079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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