View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9848_low_15 (Length: 285)
Name: NF9848_low_15
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 18608047 - 18608308
Alignment:
| Q |
1 |
gcaacattacacaatggtataaccaagacaaaccaacagattagatgactacaaatgtaaatcgacaaaaatacttggtttacgagtcttcaaccaccac |
100 |
Q |
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| T |
18608047 |
gcaacattacacaatggtataaccaagacaaaccaacagattagatgactacaaatgtaaatcgacaaaaatacttggtttacgagtcttcaaccaccac |
18608146 |
T |
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| Q |
101 |
caaaaatgaagattgatgcgattaaataacatcaccatatatagaaaggtacaactctacgtcgaatcaagttttcctttgttgaaatcctcttattaat |
200 |
Q |
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| T |
18608147 |
caaaaatgaagattgatgcgattaaataacatcaccatatatagaaaggtacaactctacgtcgaatcaagttttcctttgttgaaatcctcttattaat |
18608246 |
T |
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| Q |
201 |
agttttccacgcagataatgacactttaagaggcacaacttttttctaaattatgtctgaaa |
262 |
Q |
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| T |
18608247 |
agttttccacgcagataatgacactttaagaggcacaacttttttctaaattatgtctgaaa |
18608308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 38722744 - 38722680
Alignment:
| Q |
178 |
tttgttgaaatcctcttattaatagttttccacgcagataatgacactttaagaggcacaacttt |
242 |
Q |
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| T |
38722744 |
tttgtcgaaatcctcttattaagagttctccaaataaataatgaaactttaagaggtacaacttt |
38722680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 18174772 - 18174712
Alignment:
| Q |
177 |
ctttgttgaaatcctcttattaatagttttccacgcagataatgacactttaagaggcaca |
237 |
Q |
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| T |
18174772 |
ctttgttgaaatccttttattaaaaattctccaagcaaataatgaaactttcagaggcaca |
18174712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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