View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9848_low_2 (Length: 647)
Name: NF9848_low_2
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_2 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 14 - 632
Target Start/End: Complemental strand, 24568395 - 24567778
Alignment:
| Q |
14 |
cataggggctaaagcatattctaactttgaatatcgcaaacttttgcacaatttggaattataatataattgcagataccagatagaatatgtgaaggac |
113 |
Q |
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| T |
24568395 |
cataggggctaaagcatattctacctttgaatattgcaaacttttgcacaatttggaattataatataattgcagataccagatagaatatgtgaaggac |
24568296 |
T |
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| Q |
114 |
ggtttgcactcattagaaggccttaattgttcgatattggtgtcttccctttcacacggttgtggtcccttatttgttgggcatgatcatatattacatg |
213 |
Q |
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| T |
24568295 |
ggtttgcactcattagaaggccttaattgttcgatattggtgtcttctctttcacacggttgtggtcccttatttgttgggcatgatcatatattacatg |
24568196 |
T |
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| Q |
214 |
ttcattcatatgtacatccccatgcacattatacattactgcaacacgtgnnnnnnnnntaaaacttgtgcagttattgtgcattcaattgccttaaatt |
313 |
Q |
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| T |
24568195 |
ttcattcatatgtacatccccatgcacattatacattactgcaacacgtgcaaaaaaaataaaacttgtgcagttattgtgcattcaattaccttaaatt |
24568096 |
T |
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| Q |
314 |
tatgnnnnnnnnnngtgtgaatttgttgtagaatattctgcaaaatggttcccttttgtgtaacatatttattatcctatactactactattcttatgac |
413 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24568095 |
tatgttttttttt-gtgtgaatttgttgtagaatattctgcaaaatggttcccttttgtgcaacatatttattatcctatactactactattcttatgac |
24567997 |
T |
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| Q |
414 |
attttaacaatgattcaattcaagttataacataatttccctatgtaattaactttgcaattcatactcaagtttgagggaggccattaagaatagtgat |
513 |
Q |
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| T |
24567996 |
attttaacaatgattcaattcaagttataacataattttcctatgtaattaactttgcaattcatactcaagtttgagggaggccattaagaatagtgat |
24567897 |
T |
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| Q |
514 |
tgtttcaaaatatcacgaacaatcgatcaatcatggtataacaatgaatcctcaagtcgtcacatgagctcnnnnnnnatttcgagtaacaaacttaact |
613 |
Q |
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| T |
24567896 |
tgtttcaaaatatcgcgaacaatcgatcaatcatggtataacaatgaatcctcaagtcgtcacatgagctctttttttatttcgagtaacaaacttaact |
24567797 |
T |
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| Q |
614 |
catttcattaatgataatg |
632 |
Q |
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| T |
24567796 |
catttcattaatgataatg |
24567778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 630
Target Start/End: Complemental strand, 30963 - 30934
Alignment:
| Q |
601 |
aacaaacttaactcatttcattaatgataa |
630 |
Q |
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| T |
30963 |
aacaaacttaactcatttcattaatgataa |
30934 |
T |
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