View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9848_low_21 (Length: 248)

Name: NF9848_low_21
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9848_low_21
NF9848_low_21
[»] chr5 (4 HSPs)
chr5 (15-224)||(41361399-41361608)
chr5 (17-224)||(41037981-41038190)
chr5 (15-224)||(34153853-34154056)
chr5 (129-187)||(795306-795364)
[»] chr3 (2 HSPs)
chr3 (19-226)||(53833602-53833796)
chr3 (176-224)||(2390455-2390503)
[»] chr4 (4 HSPs)
chr4 (89-227)||(6804537-6804674)
chr4 (20-222)||(1392930-1393132)
chr4 (46-141)||(6800180-6800275)
chr4 (15-71)||(6800276-6800332)
[»] chr2 (3 HSPs)
chr2 (16-227)||(13310369-13310581)
chr2 (93-224)||(10041094-10041226)
chr2 (93-224)||(10099115-10099247)
[»] chr1 (2 HSPs)
chr1 (29-227)||(21430870-21431068)
chr1 (29-161)||(2114823-2114955)
[»] scaffold0635 (1 HSPs)
scaffold0635 (93-224)||(5844-5976)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 41361399 - 41361608
Alignment:
Q  15 ggagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccga 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  41361399 ggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcagccaaggaccga 41361498  T
Q  115 taagttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa 214  Q
    ||||||| ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41361499 taagttcttcctttcttctttattttactgataattatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa 41361598  T
Q  215 ttttccaaca 224  Q
    ||||||||||    
T  41361599 ttttccaaca 41361608  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 41038190 - 41037981
Alignment:
Q  17 agagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgata 116  Q
    ||||||||||  ||||||||||||||||||||| |||||| ||||| |||||||||||||||||| | |||   ||||||||||||||||||||||||||    
T  41038190 agagcactagctttgaggccaactgtatcaggtcattgacatgtggtggcgaaatgctcttaagctcgatgcaattgcacgcctcagccaacgaccgata 41038091  T
Q  117 agttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattatta--tctttgtttattaattaattctatgtcaa 214  Q
    |  || | |||||||||||||||||| ||||| |||||||| ||  || |  |||||||||||||||||  ||| | ||| |||||||||| | ||||||    
T  41038090 aactctttccttcttctttattttactgagaattatatttacaacagctgctatatttcttgattattatttctattttttttaattaattttgtgtcaa 41037991  T
Q  215 ttttccaaca 224  Q
    ||||||||||    
T  41037990 ttttccaaca 41037981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 34154056 - 34153853
Alignment:
Q  15 ggagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccga 114  Q
    ||||||||||||  ||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||   ||||||||||||||      || |    
T  34154056 ggagagcactagctttgaggccaactgcatcaggtcattgacctgtggtggcgaaatgctcttaagcccagtgcaattgcacgcctcagc------ccaa 34153963  T
Q  115 taagttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgttta-ttaattaattctatgtca 213  Q
    |||| |  | | |||||||||||||||| ||| | ||||| ||||||||| |  |||||||||||||||||| | | |||| |||||||||||| |||||    
T  34153962 taagct-tttctttcttctttattttactgaggattatatctataattgctgctatatttcttgattattatttctatttatttaattaattctgtgtca 34153864  T
Q  214 attttccaaca 224  Q
    |||||||||||    
T  34153863 attttccaaca 34153853  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 795364 - 795306
Alignment:
Q  129 cttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatc 187  Q
    ||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||    
T  795364 cttctttatattactgagaattatatttataattgcggtgacatttcttgattattatc 795306  T

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Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 53833602 - 53833796
Alignment:
Q  19 agcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataag 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |       ||  ||||      ||||||||||||||||| |||||||    
T  53833602 agcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaacg-------gcgaaatg------cacgcctcagccaacgatcgataag 53833688  T
Q  119 ttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaatttt 218  Q
    ||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53833689 ttcttcctttcttctttattttactgagaattatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaatttt 53833788  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 2390503 - 2390455
Alignment:
Q  176 ttgattattatctttgtttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||| | | |||||||||||||| | ||||||||||||||||    
T  2390503 ttgattattatttctatttattaattaattatgtgtcaattttccaaca 2390455  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 6804674 - 6804537
Alignment:
Q  89 gtttgcacgcctcagccaacgaccgataagttcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatct 188  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||    
T  6804674 gtttgcacgcctcagccaaggaccgataagttcttcctttcttctttattttagtgataattatatttataattgcggtgatatttcttgattattatct 6804575  T
Q  189 ttgtttattaattaattctatgtcaattttccaacaatc 227  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6804574 ttgtttattaattaattctatgtc-attttccaacaatc 6804537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 1393132 - 1392930
Alignment:
Q  20 gcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagt 119  Q
    |||||||  ||||||||||||| || ||||||||||| ||||| |||||||||||||||| || | | | ||||||||| |||| |||||| ||||||||    
T  1393132 gcactagctttgaggccaactgcattaggtgattgacatgtggtggcgaaatgctcttaaacctagtatatttgcacgcttcagtcaacgagcgataagt 1393033  T
Q  120 tcatcccttcttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaattttc 219  Q
    || ||  |||||||||||||||| ||||| ||||||||||||||| |  ||| ||||||||| |||| | | |||||||||||||||| |||||||||||    
T  1393032 tcttcatttcttctttattttactgagaattatatttataattgccgctatacttcttgattgttatttctatttattaattaattctttgtcaattttc 1392933  T
Q  220 caa 222  Q
    |||    
T  1392932 caa 1392930  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 6800275 - 6800180
Alignment:
Q  46 aggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagttcatcccttcttctttatttta 141  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  6800275 aggtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 6800180  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 6800332 - 6800276
Alignment:
Q  15 ggagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaat 71  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6800332 ggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaat 6800276  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 13310581 - 13310369
Alignment:
Q  16 gagagcactagtcttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgat 115  Q
    |||||| ||||  ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||   |||||| |||||| ||||||||||||    
T  13310581 gagagcgctagctttgaggccaactgcatcaggtgattgacctgtggtggtgaaatgctcttaagcccaatacatttgcatgcctcatccaacgaccgat 13310482  T
Q  116 aagttcatcccttcttctttattttaccgagaactatat-ttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa 214  Q
    || ||| ||   ||||||||||||||| | ||| ||||| |||||| |||    || ||||||||||  |||   | |||||||||||||||||||||||    
T  13310481 aaattcttcatctcttctttattttactgcgaattatatattataactgctactatgtttcttgatttctattgctatttattaattaattctatgtcaa 13310382  T
Q  215 ttttccaacaatc 227  Q
    |||||||||||||    
T  13310381 ttttccaacaatc 13310369  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 10041094 - 10041226
Alignment:
Q  93 gcacgcctcagccaacgaccgataagttcatcccttcttctttatttta-ccgagaactatatttataattgcggtgatatttcttgattattatctttg 191  Q
    |||| |||||||||| ||||||||||||| ||  |||||||||||||||   || || |||||||| |||||| || ||||||||||||||||     |     
T  10041094 gcacacctcagccaaagaccgataagttcttcatttcttctttattttatatgataattatatttaaaattgctgttatatttcttgattattgatgcta 10041193  T
Q  192 tttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||||| |||||| || |||||||||    
T  10041194 tttattaattaatcctatgttaactttccaaca 10041226  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 10099115 - 10099247
Alignment:
Q  93 gcacgcctcagccaacgaccgataagttcatcccttcttctttattttacc-gagaactatatttataattgcggtgatatttcttgattattatctttg 191  Q
    |||| |||||| ||| || |||||||||| ||  |||||||||||||||   || || ||||||||||||||| || ||||||||||||||||     |     
T  10099115 gcacacctcagtcaaagatcgataagttcttcatttcttctttattttatatgataattatatttataattgctgttatatttcttgattattggtgcta 10099214  T
Q  192 tttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||||| |||||| || |||||||||    
T  10099215 tttattaattaatcctatgttaactttccaaca 10099247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 21431068 - 21430870
Alignment:
Q  29 ttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagttcatccctt 128  Q
    ||||||||||||| ||||||| |||||||||||  | ||||||||||||||| ||| | |  ||||| |||||||||||||||||||||| |  ||  ||    
T  21431068 ttgaggccaactgcatcaggtcattgacctgtgatgacgaaatgctcttaagtccagtataattgcatgcctcagccaacgaccgataagcttttct-tt 21430970  T
Q  129 cttctttattttaccgagaactatatttataattgcggtgatatttcttgattattatctttgtttattaattaattctatgtcaa-ttttccaacaatc 227  Q
    | |||||||||||||||||| ||||| ||||||||| |  |||||| | ||||||||| | | ||||||||||||||||| ||||| |||||||||||||    
T  21430969 cctctttattttaccgagaattatatatataattgctgctatatttttcgattattatttctatttattaattaattctacgtcaatttttccaacaatc 21430870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 2114955 - 2114823
Alignment:
Q  29 ttgaggccaactgtatcaggtgattgacctgtggcggcgaaatgctcttaagcccaatgtgtttgcacgcctcagccaacgaccgataagttcatccctt 128  Q
    |||||| |||||| |||||| ||||||| | || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||  ||||||    
T  2114955 ttgaggtcaactgcatcaggcgattgacatatgtcggcgaaatgctcttaagcccaatgtgtttgcacgtcttagccagcgaccgataagtttttccctt 2114856  T
Q  129 cttctttattttaccgagaactatatttataat 161  Q
    |||| |||||||||  |||| ||||| ||||||    
T  2114855 cttcgttattttactaagaattatatgtataat 2114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 5976 - 5844
Alignment:
Q  93 gcacgcctcagccaacgaccgataagttcatcccttcttctttatttta-ccgagaactatatttataattgcggtgatatttcttgattattatctttg 191  Q
    |||| |||||||||| ||||||||||||| ||  |||||||||||||||   || || |||||||| |||||| || ||||||||||||||||     |     
T  5976 gcacacctcagccaaagaccgataagttcttcatttcttctttattttatatgataattatatttaaaattgctgttatatttcttgattattgatgcta 5877  T
Q  192 tttattaattaattctatgtcaattttccaaca 224  Q
    ||||||||||||| |||||| || |||||||||    
T  5876 tttattaattaatcctatgttaactttccaaca 5844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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