View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9848_low_24 (Length: 237)
Name: NF9848_low_24
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2470253 - 2470472
Alignment:
| Q |
1 |
aaagaaaaaattgaacattgcgataaatgactagaactcttttgaataaggcctatattgaaaaatacttttgggttgaagtcatcaatgcttgtgtaaa |
100 |
Q |
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| T |
2470253 |
aaagaaaaaatagaacattgcgatgaatgactggaactcttttgaataaggccaatgttaaaaaatacttttgggttgaggtcatcattgcttttgtgaa |
2470352 |
T |
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| Q |
101 |
gttttgcttcgtgccacataaaactttaaagataagttttattagcacacaaggaaaataatgttttcaaattcatgataa-tagagtggcattatcgta |
199 |
Q |
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| T |
2470353 |
gttttgcttagtgtcacataaaactttaaagataagttttattagcacacaa-gaaaataatg--ttcttatt--tgttaattagagtggcattatcgta |
2470447 |
T |
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| Q |
200 |
catttgttttcaaattcatgataat |
224 |
Q |
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|||||||||||||||| |||||||| |
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| T |
2470448 |
catttgttttcaaattgatgataat |
2470472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 29863469 - 29863411
Alignment:
| Q |
14 |
aacattgcgataaatgactagaactcttttgaataaggcctatattgaaaaatactttt |
72 |
Q |
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|||||||| | ||||| ||||||||||||| ||| ||||| || ||||||||||||||| |
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| T |
29863469 |
aacattgcaagaaatggctagaactcttttaaatgaggccaatgttgaaaaatactttt |
29863411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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