View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9848_low_3 (Length: 599)
Name: NF9848_low_3
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 46913845 - 46913514
Alignment:
| Q |
13 |
tggacatcagaatttattgaaattgtttataatttgttcagagtctcacattactgaagttccgaggttgtttgatgcataaatgtctttggacatcttg |
112 |
Q |
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| T |
46913845 |
tggacataggaatttattgaaattgtttatagtttgttcagagtctcacatttctaaggttccgaggtcgtttgatgcataaatgtctttggacatcttg |
46913746 |
T |
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| Q |
113 |
aactaacttttggaataagatccaagcccatttaaaatgccaaaagagttgggttaaagattgcaatgtgagaattgatcacatatttcacgttagacgt |
212 |
Q |
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| T |
46913745 |
aactaacttttggaataagatccaagctcatttaaaatgccaaaagagttgggttaaagattgcaatgtgagaattgatcacatatttcgcgttagacgt |
46913646 |
T |
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| Q |
213 |
gaggctgaatattgaaattgtttaaagattcaaattgttcaagttctcaaattgttggatgcataaatgtgtttggacttcctagagagtcgagaattgg |
312 |
Q |
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| T |
46913645 |
gaggctgaatattgaaattgtttgaagactcaaattgctcaaattctcaaatcgttggatgcataaatgtgtttggacttcttggagagtcgagaattgg |
46913546 |
T |
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| Q |
313 |
actcattacacacattaggcgtaagggtgcat |
344 |
Q |
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| T |
46913545 |
actcattacacacattaggcgtaagggtgcat |
46913514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 340 - 583
Target Start/End: Complemental strand, 46912921 - 46912672
Alignment:
| Q |
340 |
tgcatgggtagccataaaagcaacgactgccaaatgaaaaaaccactttccaaaagttgaaagcggtttagaattttgaacaaacaagacaaacaaacac |
439 |
Q |
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| T |
46912921 |
tgcatgggtagccataaaaacaacgactgccaaatgaaaaaaccactttccaaaagttgaaagcggtttggaattttgaacaaacaagacaaacaaacac |
46912822 |
T |
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| Q |
440 |
attcatcctttccctgactttgacaatgatataattgatcactacat------aatatatttgtaattaataaattgagagcgatatatatgttgaggaa |
533 |
Q |
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| T |
46912821 |
attcatcctttccctgactttgacaatgatataattgatcactacatgcataaaatatatttgtagaaaataaattgagagcgatatatatgttgaggaa |
46912722 |
T |
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| Q |
534 |
ttaatttattaatacattcaaaaggccactaccaatatatagttataggt |
583 |
Q |
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| T |
46912721 |
ttaatttattaatacattcaaaaggccactaccaatatatagttataggt |
46912672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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