View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9848_low_4 (Length: 541)

Name: NF9848_low_4
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9848_low_4
NF9848_low_4
[»] chr7 (8 HSPs)
chr7 (36-206)||(29744905-29745075)
chr7 (7-174)||(29751922-29752089)
chr7 (7-174)||(29601205-29601372)
chr7 (273-524)||(29752344-29752616)
chr7 (273-386)||(29600837-29600950)
chr7 (402-524)||(29593775-29593896)
chr7 (402-524)||(29600673-29600794)
chr7 (273-346)||(29593960-29594033)
[»] chr4 (3 HSPs)
chr4 (18-171)||(49353547-49353700)
chr4 (71-163)||(49342170-49342262)
chr4 (71-171)||(19031084-19031184)
[»] chr5 (1 HSPs)
chr5 (55-171)||(32782569-32782685)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 29744905 - 29745075
Alignment:
Q  36 caagttactatgtattgattctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagacacattacacaccttatctattggtgactgt 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29744905 caagttactatgtattgattctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagacacattacacaccttatctattgctgactgt 29745004  T
Q  136 gaaaatcttgagaaacttcctgagtggtcatcaactttctgtaatattacacaccttatacatcaactttt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  29745005 gaaaatcttgagaaacttcctgagtggtcatcaactttctgtaatattacacaccttatacaccaaatttt 29745075  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 29751922 - 29752089
Alignment:
Q  7 catgacaatgtaatccccaagttaaggctcaagttactatgtattgattctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagaca 106  Q
    ||||| |||| ||| |||| |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  29751922 catgagaatgcaattcccaggttaaggctcaagttactgtatattgaatctttgccacaattgttgagttttcctcaatggttgcaaggatgtgcggaca 29752021  T
Q  107 cattacacaccttatctattggtgactgtgaaaatcttgagaaacttcctgagtggtcatcaactttc 174  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29752022 cattacacagcttatttattggtcactgtgaaaatcttgagaaacttcctgagtggtcatcaactttc 29752089  T

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Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 29601372 - 29601205
Alignment:
Q  7 catgacaatgtaatccccaagttaaggctcaagttactatgtattgattctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagaca 106  Q
    ||||| |||| ||| ||||||||||||||||||||||| | |||||| || |||||| |||||||||||||||||||||  |||||||||||||| ||||    
T  29601372 catgagaatgcaattcccaagttaaggctcaagttactgtatattgaatccttgccagaattgttgagttttcctcaatggttgcaaggatgtgcggaca 29601273  T
Q  107 cattacacaccttatctattggtgactgtgaaaatcttgagaaacttcctgagtggtcatcaactttc 174  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29601272 cattacacagcttatttattggtcactgtgaaaatcttgagaaacttcctgagtggtcatcaactttc 29601205  T

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Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 273 - 524
Target Start/End: Original strand, 29752344 - 29752616
Alignment:
Q  273 ttctttgtttctgtaatattaaattattgagaaatacaatctgatccggttttgtatttcagtgcagaactgaggtaacaactgtctgttaattggttgc 372  Q
    ||||||||||||||||||| ||||||||||| || ||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  29752344 ttctttgtttctgtaatataaaattattgaggaaaacattctgattcggttttgtatttcaatgcagaactgaggtaacaactttctgttaattggttgc 29752443  T
Q  373 tgcaaattgcatgtagttat------------aaatgtt----------attggctgcatgtactaaatcgggaagacacgtgattctgtcatgttactg 450  Q
    |||| ||||||||| |||||            |||||||          | ||||||||||||||||||||  ||||| |||||||||||| ||||||||    
T  29752444 tgcatattgcatgttgttatgttattgcgctgaaatgtttggcaaatggagtggctgcatgtactaaatcgcaaagacccgtgattctgtcttgttactg 29752543  T
Q  451 ttgggaggctaggaattaaaagtgggttggcaatgctttgtagtgaaaaacaatggtggttatcagcttcaagt 524  Q
    || | ||||| ||||||||||||||||||||||||||||  ||||||| | |||| ||||||||||||| ||||    
T  29752544 tt-gaaggcttggaattaaaagtgggttggcaatgctttaaagtgaaacagaatgttggttatcagcttgaagt 29752616  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 273 - 386
Target Start/End: Complemental strand, 29600950 - 29600837
Alignment:
Q  273 ttctttgtttctgtaatattaaattattgagaaatacaatctgatccggttttgtatttcagtgcagaactgaggtaacaactgtctgttaattggttgc 372  Q
    ||||||||||||||||||| ||||||||||| || ||| || ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  29600950 ttctttgtttctgtaatataaaattattgaggaaaacattcggattcggttttgtatttcaatgcagaactgaggtaacaactttctgttaattggttgc 29600851  T
Q  373 tgcaaattgcatgt 386  Q
    |||| |||||||||    
T  29600850 tgcatattgcatgt 29600837  T

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Target: chr7; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 402 - 524
Target Start/End: Complemental strand, 29593896 - 29593775
Alignment:
Q  402 tggctgcatgtactaaatcgggaagacacgtgattctgtcatgttactgttgggaggctaggaattaaaagtgggttggcaatgctttgtagtgaaaaac 501  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||| |||| ||| | ||||||||| ||||||||||||||||||| ||||||||||    
T  29593896 tggctgcatgtactaaatcgggaagacccgtgattctgtcctgtaactattgg-aggttgggaattaaatgtgggttggcaatgctttgaagtgaaaaac 29593798  T
Q  502 aatggtggttatcagcttcaagt 524  Q
    ||||||||||| | |||||||||    
T  29593797 aatggtggttacctgcttcaagt 29593775  T

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Target: chr7; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 402 - 524
Target Start/End: Complemental strand, 29600794 - 29600673
Alignment:
Q  402 tggctgcatgtactaaatcgggaagacacgtgattctgtcatgttactgttgggaggctaggaattaaaagtgggttggcaatgctttgtagtgaaaaac 501  Q
    |||||| |||||||||||||  ||||| |||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||| |     
T  29600794 tggctgaatgtactaaatcgcaaagacccgtgattctgtcttgttactgttga-aggcttggaattaaaagtgggttggcaatgctttgaagtgaaacag 29600696  T
Q  502 aatggtggttatcagcttcaagt 524  Q
    |||| ||||||||||||||||||    
T  29600695 aatgttggttatcagcttcaagt 29600673  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 29594033 - 29593960
Alignment:
Q  273 ttctttgtttctgtaatattaaattattgagaaatacaatctgatccggttttgtatttcagtgcagaactgag 346  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||    
T  29594033 ttctttgtttctgtaatattaaattattgaggaaaacaatctgatccggttttgtatttcaatgcagaactgag 29593960  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 49353547 - 49353700
Alignment:
Q  18 aatccccaagttaaggctcaagttactatgtattgattctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagacacattacacacc 117  Q
    |||||| ||||||| ||| ||||| ||| || |||| |||||||||||| |  ||||||||||| |||  ||| |||||||||| ||||||||| |||||    
T  49353547 aatcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacacc 49353646  T
Q  118 ttatctattggtgactgtgaaaatcttgagaaacttcctgagtggtcatcaact 171  Q
    ||    |||| || |||||||||||||||  | ||||||||||||| |||||||    
T  49353647 ttggtaattgatggctgtgaaaatcttgatgagcttcctgagtggttatcaact 49353700  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 49342170 - 49342262
Alignment:
Q  71 tgagttttcctcaatcattgcaaggatgtgcagacacattacacaccttatctattggtgactgtgaaaatcttgagaaacttcctgagtggt 163  Q
    |||||||||| ||||  |||||||||||||||||||||||||| |||||    |||| || |||||||||||| ||| | |||||| ||||||    
T  49342170 tgagttttccgcaatggttgcaaggatgtgcagacacattacaaaccttggtaattgatggctgtgaaaatctagaggagcttcctcagtggt 49342262  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 19031084 - 19031184
Alignment:
Q  71 tgagttttcctcaatcattgcaaggatgtgcagacacattacacaccttatctattggtgactgtgaaaatcttgagaaacttcctgagtggtcatcaac 170  Q
    ||||| ||||| |||  |||||||||| ||  |||||||||||||||||    |||| | ||||||||||||||||  | ||||||||||||| ||||||    
T  19031084 tgagtattcctaaatggttgcaaggatctgtcgacacattacacaccttgcaaattgtttactgtgaaaatcttgatgagcttcctgagtggttatcaac 19031183  T
Q  171 t 171  Q
    |    
T  19031184 t 19031184  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 32782685 - 32782569
Alignment:
Q  55 tctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagacacattacacaccttatctattggtgactgtgaaaatcttgagaaacttc 154  Q
    |||||||||||| |  ||||| ||||| |||  ||||||| |||||| || |||||||| |||||  | |||| ||||||||||||| ||||  | ||||    
T  32782685 tctttgccacaacttgtgagtattcctaaatggttgcaagaatgtgcggatacattacagaccttggcaattgttgactgtgaaaatattgatgagcttc 32782586  T
Q  155 ctgagtggtcatcaact 171  Q
    ||||||||| |||||||    
T  32782585 ctgagtggttatcaact 32782569  T

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