View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9848_low_5 (Length: 461)
Name: NF9848_low_5
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 49645571 - 49645368
Alignment:
| Q |
1 |
attaaattgttacatctattcattcattgannnnnnn-cttctaaacctacatgtttaattttacataaatcaatctatgaacaaatttctatgctttca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49645571 |
attaaattgttacatctattcattcattgattttttttcttctaaacctacatgtttaattttacataaatcaatctatgaacaaatttctatgctttca |
49645472 |
T |
|
| Q |
100 |
aacaaagataagtgtcattatgctttaattatttcccttaaataattattaattatatgtatatgttacatgattctcagcaaaatagaatcaacatacg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49645471 |
aacaaagataagtgtcattatgctttaattatttcccttaaataattattaattatatgtatatgttacatgattctcagcaaaatagaatcaacatacg |
49645372 |
T |
|
| Q |
200 |
aagg |
203 |
Q |
| |
|
|||| |
|
|
| T |
49645371 |
aagg |
49645368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 279 - 446
Target Start/End: Complemental strand, 49645292 - 49645125
Alignment:
| Q |
279 |
ttaaaataagatgacatgatggaatatcttatagttttcaaattctacgaatatttataggctacatatgtatcgtaaactttcaattcaatgttaaatt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49645292 |
ttaaaataagatgacatgatggaatatcttatagttttcaaattctacgaatatttataggctacatatgtatcgtaaactttcaattcaatgttaaatt |
49645193 |
T |
|
| Q |
379 |
gatttcattcgccttttaaaaagagttattaaaggtgtaagaatgctaagtttgacaagtgccaatag |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49645192 |
gatttcattcgccttttaaaaagagttattaaaggtgtaagaatgttaagtttgacaagtgccaatag |
49645125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 9083531 - 9083591
Alignment:
| Q |
376 |
attgatttcattcgccttttaaaaagagttattaaaggtgtaagaatgctaagtttgacaa |
436 |
Q |
| |
|
|||||||| ||||||||| || |||||| ||||||||||||||| ||| ||||| |||||| |
|
|
| T |
9083531 |
attgatttaattcgccttctacaaagagatattaaaggtgtaagtatgttaagtatgacaa |
9083591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University