View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9848_low_6 (Length: 428)
Name: NF9848_low_6
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 6517198 - 6516792
Alignment:
| Q |
16 |
agcaagatcaggtctatcacgttttctatactcagtacactttaaagccagcttagcacatgccaaagcctcttcaacaggacaatttggtacatttgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6517198 |
agcaagatcaggtctatcacgttttctatactcaatacactttaaagccagcttagcacatgccaaagcctcttcaacaggacaatttggtacatttgga |
6517099 |
T |
|
| Q |
116 |
tcaagcacgttcatgaagtttcttttctttatagcttcttcaactaaatgagacaaacccattggaggctttgcagtgataatttgtagcaaaatcatac |
215 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6517098 |
tcaagcacgttcatgaagtttcctttttttatagcttcttcaactatatgagataaacccattggaggctttgcagtgataatttgtagcaaaatcatac |
6516999 |
T |
|
| Q |
216 |
caaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6516998 |
caaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagctgcgcctgtcatgcgatattg |
6516899 |
T |
|
| Q |
316 |
agtggttttgttggctatcgaagcaggaacgagtcgcgccaaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggtttc |
415 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516898 |
agtggttttgttggctattgaagcaggaacgagtcgcgccaaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggtttc |
6516799 |
T |
|
| Q |
416 |
atctcac |
422 |
Q |
| |
|
|| |||| |
|
|
| T |
6516798 |
atatcac |
6516792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 414
Target Start/End: Complemental strand, 42674191 - 42673949
Alignment:
| Q |
172 |
acccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcagga |
271 |
Q |
| |
|
||||||||||| |||| |||| || |||||||| | || | ||| |||||| |||| |||||||| || ||||||| ||| |||||||||||||| ||| |
|
|
| T |
42674191 |
acccattggagtctttccagtaatgatttgtagaagcataacacctaatgaatatatgtctgattttacgcccaatagtcctgtttgttgatactccgga |
42674092 |
T |
|
| Q |
272 |
tcaatgtagcaaaatgttccagctgcacctgtcatgcgatattgagtggttttgttggctatcgaagcaggaacgagtcgcgccaaaccaacatcactga |
371 |
Q |
| |
|
||||| || |||||||||| |||||| |||| || |||||| || |||||||| ||| |||| ||||| || | |||||||||||||| |||| |
|
|
| T |
42674091 |
tcaatataaaaaaatgttccggctgcatttgtcttgtgatattcggtagttttgttttctacagaaggtggaacaagccttgccaaaccaacatcgctga |
42673992 |
T |
|
| Q |
372 |
tcttgctaacgtagtttttgtctaagagaatgtttcctggttt |
414 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
42673991 |
tcttgcttacgtagtttctgtctaagagaatgtttgctggttt |
42673949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 50439260 - 50439406
Alignment:
| Q |
169 |
caaacccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactca |
268 |
Q |
| |
|
|||||||||||| | ||||| || | |||||| || ||||| || |||| |||| ||| ||||||||||||||| || | ||| ||||| ||||||||| |
|
|
| T |
50439260 |
caaacccattggtgattttgctgtcaaaatttgaaggaaaatgattccaagtgaatatacatctgatttcacacctaacattcctgtttgctgatactca |
50439359 |
T |
|
| Q |
269 |
ggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
315 |
Q |
| |
|
||||| || || || |||||||| |||| | |||||||||||||| |
|
|
| T |
50439360 |
ggatctatataacagaatgttcctgctgttgccgtcatgcgatattg |
50439406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 48235715 - 48235755
Alignment:
| Q |
254 |
gtttgttgatactcaggatcaatgtagcaaaatgttccagc |
294 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
48235715 |
gtttgttgatactcgggatcaatataacaaaatgttccagc |
48235755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 3686683 - 3686625
Alignment:
| Q |
356 |
aaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggttt |
414 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
3686683 |
aaaccaacatcacttattttgctaacaaaatttttgtctaagagaatgttggctggttt |
3686625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 3686780 - 3686724
Alignment:
| Q |
259 |
ttgatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
315 |
Q |
| |
|
||||||||| ||||||||||| || |||||||||||||| | |||||| ||||||| |
|
|
| T |
3686780 |
ttgatactctggatcaatgtaacataatgttccagctgcttcagtcatgtgatattg |
3686724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University