View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9848_low_7 (Length: 414)
Name: NF9848_low_7
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 60 - 330
Target Start/End: Original strand, 39933339 - 39933610
Alignment:
| Q |
60 |
cataaaaatattaattttaaatttgacatcacccccnnnnnnnnnn-tagtatgcaaaactttcccgaaattgagtaaattttcggaaaacatagagtta |
158 |
Q |
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| T |
39933339 |
cataaaaatattaattttatatttgacatcaccctcaaaaaaaaaaatagtatgcaaaactttcccgaaattgagaaaattttcggaaaacatagagtta |
39933438 |
T |
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| Q |
159 |
agtttgtcgtagagaaatttataaaccaaaaaactcgaataaattttttcaaaatttagtgtattattgcataacattcgtcttcgccctatacccagct |
258 |
Q |
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| T |
39933439 |
agtttgtcgtagagaaatttataaaccaaaaaactcgaataaattttttcaaaatttagtgtattattgcataccattcgtcttcgccctatacccagct |
39933538 |
T |
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| Q |
259 |
ttcatacaacctatcaacaataaattgctgaaagatttaagaagtataagtttcacattcacaattcaaaag |
330 |
Q |
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| T |
39933539 |
ttcatacaacctatcaacaataaattgctgaaagatttaagaagtataagtttcatattcacaattcaaaag |
39933610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 39933259 - 39933309
Alignment:
| Q |
11 |
cagagagagagcacacacataaaccacgtcttgaaaattatgccttataca |
61 |
Q |
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| T |
39933259 |
cagagagagagcacacacataaaccacgtcttgaaaattatgccttataca |
39933309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 394
Target Start/End: Original strand, 39933638 - 39933669
Alignment:
| Q |
363 |
gttttcaaatctaaaggttaagaggcaaaccc |
394 |
Q |
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| T |
39933638 |
gttttcaaatctaaaggttaagaggcaaaccc |
39933669 |
T |
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