View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9848_low_8 (Length: 404)
Name: NF9848_low_8
Description: NF9848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9848_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 869720 - 870097
Alignment:
| Q |
17 |
acaaatagagtatgatttgaagtcaaaatctgtgccgtcatgcacaagcatcagaattttctgaaaacctcaaatcatctaactctcgcaaactaattga |
116 |
Q |
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| T |
869720 |
acaaatagagtatgatttgaagtcaaaatcggtgccgtcatgcacaagcatcagaattttctgaaaacctcaaatcatctaactctcgcaaactaattga |
869819 |
T |
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| Q |
117 |
aacatttcatttctcaaattgtcttatttatataatcccttcccaatttagctcccaattctgttgtacttaaacaatactaaccagtataccaacggat |
216 |
Q |
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| T |
869820 |
aacatttcatttctcaaattgtcttatttatataatcccttcccagtttagctcccaattctgttgtacttaaacaatactaaccagtataacaacggat |
869919 |
T |
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| Q |
217 |
caaataatatgtttccaaattagcaatatgcgagtgaagagtacaatttaaatcaaaatcaatgtcatcaagcaaaagaattaactaatagaatctaaaa |
316 |
Q |
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| T |
869920 |
caaataacatgtttccaaattagcaatatgcgagtgaagagtacaatttaaatcaaaatcaatgtcatcaagcaaaagaattaactactagaatctaaaa |
870019 |
T |
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| Q |
317 |
acctcaaatcaaattactctaacaaattaattgaataatctttttcctctaactatcttaattatcacaatccctttg |
394 |
Q |
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| T |
870020 |
acctcaaatcaaattactctaacaaattaattgaataatctttttcctctaactatcttaattatcacaatccctttg |
870097 |
T |
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