View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9849_low_11 (Length: 215)
Name: NF9849_low_11
Description: NF9849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9849_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 39544537 - 39544718
Alignment:
| Q |
18 |
aagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaag |
117 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544537 |
aagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaa |
39544636 |
T |
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| Q |
118 |
acactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaag |
199 |
Q |
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| T |
39544637 |
acactggtgattgacttgttactttggagctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatataaag |
39544718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 39525241 - 39525421
Alignment:
| Q |
18 |
aagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaag |
117 |
Q |
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| T |
39525241 |
aagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtttggtagagaggtgaag |
39525340 |
T |
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| Q |
118 |
acactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaa |
198 |
Q |
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| T |
39525341 |
gcactgatgattgactggtttctatggagcttttgctgaaacttgttttagggtagttggggtttgattccccaatataaa |
39525421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 39521744 - 39521928
Alignment:
| Q |
18 |
aagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaag |
117 |
Q |
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| T |
39521744 |
aagaaatggaaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaag |
39521843 |
T |
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| Q |
118 |
acactggtgattgacttgttactttggag---ctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaag |
199 |
Q |
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| T |
39521844 |
acactggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaag |
39521928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 39576389 - 39576573
Alignment:
| Q |
18 |
aagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaag |
117 |
Q |
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| T |
39576389 |
aagaaacggaaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaag |
39576488 |
T |
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| Q |
118 |
acactggtgattgacttgttactttggagcttttt---ctgaaacttgttttcgggtaagtagggtttgattcaccaatataaag |
199 |
Q |
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| T |
39576489 |
acactgatgatggattggtttctatggaacttctttggctgaatgattttttagggtaagcatggtttgattcaccaatataaag |
39576573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 39580918 - 39581110
Alignment:
| Q |
18 |
aagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaa- |
116 |
Q |
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|||||| |||||||||||||||| ||||||||||||| ||| ||||| ||| |||| | |||| ||||||| ||||||||||||||||||||||| |
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| T |
39580918 |
aagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaa |
39581017 |
T |
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| Q |
117 |
--------gacactggtgat---tgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaa |
198 |
Q |
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| T |
39581018 |
gtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaa |
39581110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 39511500 - 39511653
Alignment:
| Q |
20 |
gaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaagac |
119 |
Q |
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|||| ||||||||||||| |||||||||||||| ||||| ||||| || |||| |||||| |||| |||||||| ||||||||||||| ||||| |
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| T |
39511500 |
gaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaagga |
39511599 |
T |
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| Q |
120 |
actggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaa |
173 |
Q |
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|||| ||||||| ||||| || |||||||||| |||||||||||| | |||||| |
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| T |
39511600 |
actgatgattgatttgtttctatggagcttttgctgaaacttgttatagggtaa |
39511653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 3331541 - 3331399
Alignment:
| Q |
20 |
gaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaagac |
119 |
Q |
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|||| |||||||||||||||||||||||||||| || ||| ||| || |||| || |||||||| || |||||| ||||||| |||||||||| |
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| T |
3331541 |
gaaatggaaacgtaccatgtaggtgttgtttgggataatagtgaatc--taccaagattcagaatggaaaattcttgctctttggtaaagaggtgaagga |
3331444 |
T |
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| Q |
120 |
actggtgattgacttgttactttggagctttttctgaaacttgtt |
164 |
Q |
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| T |
3331443 |
actgattattgatttgtttctacggagcttttgctgaaacttgtt |
3331399 |
T |
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