View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9849_low_3 (Length: 429)
Name: NF9849_low_3
Description: NF9849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9849_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 419
Target Start/End: Complemental strand, 35697667 - 35697255
Alignment:
| Q |
7 |
cctccttgtgatacaaattttgattaaatcattcattattcaatttcaatactcataatctcatcctcaacaaatcataaacaagttgagaaagaaagtg |
106 |
Q |
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| T |
35697667 |
cctccttgtgatacaaattttgattaaatcattcattattcaatttcaatactcataatctcatcctcaacaaatcataaacaagttgagaaagaaaggg |
35697568 |
T |
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| Q |
107 |
tnnnnnnnttgaaacaaaggagacaatactcaacatccccaaatgaatcaaatttctatttctaatccaaactatatatgcatcacaaccattaaaatta |
206 |
Q |
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| T |
35697567 |
taaaaaaattgaaacaaaggagacaatactcaacatccccaaatgaatcaaatttctatttctaatccaaactatatatgaatcacaaccataaaaatta |
35697468 |
T |
|
| Q |
207 |
ccaattaattttacaacaagcacctcatcaaatataagacgattcataagttagttcagagtcagcaacacgaggcttattagtgctaccactcttctta |
306 |
Q |
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| T |
35697467 |
ccaattaattttacaacaagcacctcatcaaatataagacgattcataagttagttcagagtcagcaacacgaggtttattagtgctaccactcttctta |
35697368 |
T |
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| Q |
307 |
tggttaccccctccacaagttattgaaatctcacaccctaatgctgttccaaagcacgaaaacaaaccgctaccttgccttcgatgcttacctttacctt |
406 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35697367 |
tggttaccccctccgcaagttatcgaaatctcacaccctaatgctgttccaaagcacgaaaacaaaccgctaccttgccttcgattcttacctttacctt |
35697268 |
T |
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| Q |
407 |
tccctttcctttg |
419 |
Q |
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|||||||| |||| |
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| T |
35697267 |
tccctttcgtttg |
35697255 |
T |
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