View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9849_low_4 (Length: 407)
Name: NF9849_low_4
Description: NF9849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9849_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 4738918 - 4738644
Alignment:
| Q |
1 |
tcaaataaatcaagaacgataattttattgaatatggtgaaaacccnnnnnnngagggagtttcaataaggtttttgacattatttgtttataaaattgt |
100 |
Q |
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| T |
4738918 |
tcaaataaatcaagaatgatatttttattgaatatggtgaaaacccaaaaaaagagggagtttgaataaggtttttgacattatttatttataaaattgt |
4738819 |
T |
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| Q |
101 |
atataatgtttcttttgaaagnnnnnnnnngcatgttttaaaacacgtttgaaaaagatgattgattacatgttttaaatagaagaattgaaagaaagag |
200 |
Q |
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| T |
4738818 |
atataatgtttcttttgaaaaagaaaaa---catgttttaaaacacgtttcaaaaagatgatc----acaagttttaaatagaagaattgaaagaaagag |
4738726 |
T |
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| Q |
201 |
acgatcaacgca-gttacaagttacactctgaagatacaaataattttgctcaaaatactagtggaaattaatttataaaaa |
281 |
Q |
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||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4738725 |
gcgatcaaagcaagttacaagttacactcttaagatacaaataattttgctcaaaatattagtggaaattaatttataaaaa |
4738644 |
T |
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