View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9849_low_7 (Length: 257)

Name: NF9849_low_7
Description: NF9849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9849_low_7
NF9849_low_7
[»] chr1 (4 HSPs)
chr1 (19-213)||(4260115-4260309)
chr1 (19-213)||(4263737-4263931)
chr1 (9-52)||(10130134-10130177)
chr1 (11-52)||(17251312-17251353)
[»] chr6 (26 HSPs)
chr6 (11-86)||(29357904-29357979)
chr6 (11-86)||(24730854-24730929)
chr6 (11-86)||(24890171-24890246)
chr6 (11-86)||(28926472-28926547)
chr6 (11-86)||(29211318-29211393)
chr6 (11-86)||(29898076-29898151)
chr6 (11-86)||(30999863-30999938)
chr6 (11-80)||(30061926-30061995)
chr6 (11-83)||(29905638-29905710)
chr6 (11-83)||(30118669-30118741)
chr6 (11-86)||(29073762-29073837)
chr6 (11-86)||(29078526-29078601)
chr6 (11-86)||(29106335-29106410)
chr6 (11-86)||(29887296-29887371)
chr6 (19-90)||(29946444-29946515)
chr6 (11-86)||(30126980-30127055)
chr6 (11-86)||(30060087-30060162)
chr6 (11-81)||(29876824-29876894)
chr6 (11-75)||(25451117-25451181)
chr6 (11-86)||(29835214-29835289)
chr6 (11-86)||(29866648-29866723)
chr6 (11-86)||(29894552-29894627)
chr6 (11-86)||(24271872-24271947)
chr6 (19-86)||(24886491-24886557)
chr6 (11-86)||(29348523-29348598)
chr6 (11-86)||(29366346-29366421)
[»] scaffold0573 (1 HSPs)
scaffold0573 (11-86)||(4136-4211)
[»] chr3 (1 HSPs)
chr3 (12-86)||(24219160-24219234)
[»] scaffold0054 (1 HSPs)
scaffold0054 (11-52)||(53555-53596)
[»] chr2 (1 HSPs)
chr2 (19-83)||(15062804-15062868)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 4260309 - 4260115
Alignment:
Q  19 atgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccatgatggtgttctaagttctggaaaatctttacc 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4260309 atgatagaggtgaaccacctaatataattacttattgtcctatagtggatgttttatgcaaaaaccatgatggtgttctaagttctggaaaatctttacc 4260210  T
Q  119 gtcttgtggtttatcattctctaataaagcattttctagttctcctaaactttcgtcattcctaaatgctattgagccaaaggaactcggtacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  4260209 gtcttgtggtttatcattctctaataaagcattttctagttcttctaaactttcgttattcctaaatgttattgagccaaaggaactcggtacaa 4260115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 4263931 - 4263737
Alignment:
Q  19 atgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccatgatggtgttctaagttctggaaaatctttacc 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4263931 atgatagaggtgaaccacctaatataattacttattgtcctatagtggatgttttatgcaaaaaccatgatggtgttctaagttctggaaaatctttacc 4263832  T
Q  119 gtcttgtggtttatcattctctaataaagcattttctagttctcctaaactttcgtcattcctaaatgctattgagccaaaggaactcggtacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  4263831 gtcttgtggtttatcattctctaataaagcattttctagttcttctaaactttcgttattcctaaatgttattgagccaaaggaactcggtacaa 4263737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 10130134 - 10130177
Alignment:
Q  9 agtgagatgaatgatagaggtcaaccacctaatataattactta 52  Q
    |||||||||  |||||||||||||| ||||||||||||||||||    
T  10130134 agtgagatgtctgatagaggtcaacaacctaatataattactta 10130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 17251312 - 17251353
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattactta 52  Q
    ||||||| ||||||||||||||||||||||| |||| |||||    
T  17251312 tgagatgcatgatagaggtcaaccacctaatgtaataactta 17251353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 29357979 - 29357904
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||||||||| |||||||  || |||||||||||| ||||||||||||||||    
T  29357979 tgagatgcatgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccat 29357904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 24730854 - 24730929
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||||||||||| |||||   | |||||||||||| ||||||||||||||||    
T  24730854 tgagatgcatgatagaggtcaaccacctaatataataacttacaattctatattggatgctttatgcaaaaaccat 24730929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 24890246 - 24890171
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| ||||||||||||| |||||||||||| |||||||  || |||||||||||| ||||||||||||||||    
T  24890246 tgagatgcatgatagaggtcagccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccat 24890171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 28926547 - 28926472
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||| |||||||||||||  || || ||||||||| ||||||||||||||||    
T  28926547 tgagatgcatgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccat 28926472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 29211393 - 29211318
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||||||||| |||||||  || |||||||||||| ||||||||||| ||||    
T  29211393 tgagatgcatgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaacccat 29211318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29898076 - 29898151
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| ||||||||||||||||||||||||||||||| ||  || |||||||| ||| ||||||||||||||||    
T  29898076 tgagatgcatgatagaggtcaaccacctaatataattacgtacagttctatattgaatgctttatgcaaaaaccat 29898151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 30999938 - 30999863
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||||||||| ||| |||  || |||||||||||| ||||||||||||||||    
T  30999938 tgagatgcatgatagaggtcaaccacctaatatagttatttacagttctatattggatgctttatgcaaaaaccat 30999863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 30061995 - 30061926
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaa 80  Q
    ||||||| ||||||||||||||||||||||||||||||||||   | |||||||||||| ||||||||||    
T  30061995 tgagatgcatgatagaggtcaaccacctaatataattacttacaattctatattggatgctttatgcaaa 30061926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 29905638 - 29905710
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaac 83  Q
    ||||||| ||||||||||||| |||||| |||||||||||||  || |||||||||||| |||||||||||||    
T  29905638 tgagatgcatgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaac 29905710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 30118741 - 30118669
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaac 83  Q
    ||||||| ||||||||||||| |||||| |||||||||||||  || |||||||||||| |||||||||||||    
T  30118741 tgagatgcatgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaac 30118669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29073762 - 29073837
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||  ||||||| |||||||||||||  || |||||||||||| ||||||||||||||||    
T  29073762 tgagatgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccat 29073837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29078526 - 29078601
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||  ||||||| |||||||||||||  || |||||||||||| ||||||||||||||||    
T  29078526 tgagatgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccat 29078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29106335 - 29106410
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||  ||||||| |||||||||||||  || |||||||||||| ||||||||||||||||    
T  29106335 tgagatgcatgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccat 29106410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29887296 - 29887371
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||| |||||||||||||  || || |||| |||| ||||||||||||||||    
T  29887296 tgagatgcatgatagaggtcaaccacctgatataattacttacagttctttattagatgctttatgcaaaaaccat 29887371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 29946444 - 29946515
Alignment:
Q  19 atgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccatgatg 90  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||| ||| ||||||    
T  29946444 atgatagaggtcaaccacctaatataattacttacaactctatattggatgttttatgcaagaactatgatg 29946515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 30127055 - 30126980
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||| ||||||||| |||   | |||||||||||| ||||||||||||||||    
T  30127055 tgagatgcatgatagaggtcaaccacctgatataattatttacaattctatattggatgctttatgcaaaaaccat 30126980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 30060162 - 30060087
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||||||||||||||||||| |||| |||||||||||||   | |||||||  ||| ||||||||||||||||    
T  30060162 tgagatgaatgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccat 30060087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 29876824 - 29876894
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaa 81  Q
    ||||||| |||||||||| |||||||||||||||||||||||   | |||||||| ||| |||||||||||    
T  29876824 tgagatgcatgatagaggccaaccacctaatataattacttacaattctatattgtatgctttatgcaaaa 29876894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 25451117 - 25451181
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttat 75  Q
    ||||||| ||||||||||||||||||| |||||| |||||||  || |||||||||||| |||||    
T  25451117 tgagatgcatgatagaggtcaaccaccaaatatatttacttacagttctatattggatgctttat 25451181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29835214 - 29835289
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| ||||| | |||  ||||||| |||||||||||||  || |||||||||||| ||||||||||||||||    
T  29835214 tgagatgcatgatcggggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccat 29835289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29866648 - 29866723
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| ||||| | |||  ||||||| |||||||||||||  || |||||||||||| ||||||||||||||||    
T  29866648 tgagatgcatgatcggggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccat 29866723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 29894552 - 29894627
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| ||||| | |||  ||||||| |||||||||||||  || |||||||||||| ||||||||||||||||    
T  29894552 tgagatgcatgatcggggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccat 29894627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 24271947 - 24271872
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| ||||| |||| |||| |||| ||||||| || ||  || |||||||||||| ||||||||||||||||    
T  24271947 tgagatgcatgatcgagggcaacaacctgatataatcacgtacagttctatattggatgatttatgcaaaaaccat 24271872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 24886557 - 24886491
Alignment:
Q  19 atgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||||||||| |||||| |||||||||||||   | |||||||||||| |||||| |||||||||    
T  24886557 atgatagaggtcagccacctgatataattacttacaattctatattggatgctttatg-aaaaaccat 24886491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 29348598 - 29348523
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||  ||||| | ||| |||||||||   | |||||||||||| ||||||||||||||||    
T  29348598 tgagatgcatgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccat 29348523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 29366421 - 29366346
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||  ||||| | ||| |||||||||   | |||||||||||| ||||||||||||||||    
T  29366421 tgagatgcatgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccat 29366346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 4136 - 4211
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    ||||||| |||||||||||||||||||| |||||||||||||  || || ||||||||| ||||||||||||||||    
T  4136 tgagatgcatgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccat 4211  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 24219234 - 24219160
Alignment:
Q  12 gagatgaatgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaaccat 86  Q
    |||||| ||||||||||||||||||||||||||||||||||   | || ||||||||| ||||||||||||||||    
T  24219234 gagatgcatgatagaggtcaaccacctaatataattacttacaattctttattggatgctttatgcaaaaaccat 24219160  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 53596 - 53555
Alignment:
Q  11 tgagatgaatgatagaggtcaaccacctaatataattactta 52  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  53596 tgagatgcatgatagaggtcaaccacctaatataattactta 53555  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 15062868 - 15062804
Alignment:
Q  19 atgatagaggtcaaccacctaatataattacttattgtcctatattggatgttttatgcaaaaac 83  Q
    ||||||||||||||||| ||||||||||||||||   | ||||||| |||| | |||||||||||    
T  15062868 atgatagaggtcaaccatctaatataattacttacaattctatattagatgctatatgcaaaaac 15062804  T

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