View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9849_low_8 (Length: 248)

Name: NF9849_low_8
Description: NF9849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9849_low_8
NF9849_low_8
[»] chr1 (15 HSPs)
chr1 (1-232)||(30367663-30367894)
chr1 (2-229)||(13069749-13069961)
chr1 (127-229)||(13130357-13130459)
chr1 (2-229)||(13204866-13205090)
chr1 (107-228)||(13007700-13007818)
chr1 (127-229)||(13094928-13095030)
chr1 (145-229)||(13067737-13067821)
chr1 (157-229)||(13162080-13162152)
chr1 (2-180)||(19727560-19727723)
chr1 (174-227)||(13086701-13086754)
chr1 (151-197)||(13010794-13010840)
chr1 (2-197)||(13101407-13101587)
chr1 (2-146)||(13214226-13214358)
chr1 (2-90)||(13007607-13007695)
chr1 (187-227)||(13080440-13080480)
[»] chr6 (1 HSPs)
chr6 (2-232)||(31396234-31396460)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30367894 - 30367663
Alignment:
Q  1 acctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30367894 acctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttacaaagttgaaa 30367795  T
Q  101 taagattcatccatttcttcactgctgctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttcttgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30367794 taagattcatccatttcttcactgctgctgcacttgcttttctcttcgcgtttggcaaatgttacactttcatacaagaatcggtcaagattttcttcag 30367695  T
Q  201 ctaccttgtacttcttttcttgaccaacaaga 232  Q
    ||||||||||||||||||||||||||||||||    
T  30367694 ctaccttgtacttcttttcttgaccaacaaga 30367663  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 13069961 - 13069749
Alignment:
Q  2 cctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaat 101  Q
    |||||||| || |||||||||||||||||||||||||||||||||  || ||||    ||||| |  |||||||||||||||||||||| ||||          
T  13069961 cctgctaaaaagagagagagtgcattgtctctaagatacttctcatccattccccttgttccatattcttccttcatcagtgcttttacaaagt------ 13069868  T
Q  102 aagattcatccatttcttcactgctgctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttcttgagc 201  Q
          |||| |||| ||||||||||||||||||||||| |||||    ||||| |||||||| || |||||||||||| ||||||||||||||||  ||    
T  13069867 ------catcaatttattcactgctgctgcacttgctttgctcttg---tttggaaaatgttataccttcatacaagaaacggtcaagattttcttcggc 13069777  T
Q  202 taccttgtacttcttttcttgaccaaca 229  Q
    | || |  ||||||||||||||| ||||    
T  13069776 ttcccttaacttcttttcttgacgaaca 13069749  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 13130357 - 13130459
Alignment:
Q  127 gctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttcttgagctaccttgtacttcttttcttgacca 226  Q
    |||||||||||||| |||||| |  | || |||||||| |||||||||||||||||||||||||| |||||| || |||||| ||||||| |||||||||    
T  13130357 gctgcacttgctttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgacca 13130456  T
Q  227 aca 229  Q
    |||    
T  13130457 aca 13130459  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 13204866 - 13205090
Alignment:
Q  2 cctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaat 101  Q
    |||||||| || |||||||||| || |||||||||| ||||| |||||| | | || |||||| | ||||||||| || | |||||| |   |   ||||    
T  13204866 cctgctaagaagagagagagtgtatcgtctctaagaaacttcccactcatttcttcctttccatatccttccttcgtccgagctttttcccggacaaaat 13204965  T
Q  102 aagattcatccatttcttcactgctgctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttcttgagc 201  Q
    || |||| |||||||||||||| | | || |||| |||| |||||    ||||| |||||||| ||||||||| ||||||||||||||||||||||  ||    
T  13204966 aacattcgtccatttcttcactaccgttgtacttcctttgctcttg---tttggaaaatgttatactttcatataagaatcggtcaagattttcttcggc 13205062  T
Q  202 taccttgtacttcttttcttgaccaaca 229  Q
    | || |  ||||||||||||||||||||    
T  13205063 ttcccttaacttcttttcttgaccaaca 13205090  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 13007700 - 13007818
Alignment:
Q  107 tcatccatttcttcactgctgctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttcttgagctacct 206  Q
    |||||||||||||||||||||||||||||||||| |||||    ||||| ||||||||  |||||||||||||| | ||||||||||| ||  ||| |||    
T  13007700 tcatccatttcttcactgctgctgcacttgctttgctctt---gtttggaaaatgttattctttcatacaagaaactgtcaagatttttttcggcttcct 13007796  T
Q  207 tgtacttcttttcttgaccaac 228  Q
    |  ||||| |||||||||||||    
T  13007797 ttaacttcctttcttgaccaac 13007818  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 13094928 - 13095030
Alignment:
Q  127 gctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttcttgagctaccttgtacttcttttcttgacca 226  Q
    ||||||||| |||| |||||| |  | || |||||||| |||||||||||||||||||||||||| |||||| || |||||| ||||||| |||||||||    
T  13094928 gctgcacttactttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgacca 13095027  T
Q  227 aca 229  Q
    |||    
T  13095028 aca 13095030  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 13067821 - 13067737
Alignment:
Q  145 ttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttcttgagctaccttgtacttcttttcttgaccaaca 229  Q
    ||||| ||||| ||||||||  ||||||||||||||||| |||| ||||||||| ||||||||| |||||||||| |||||||||    
T  13067821 ttcgcgtttggaaaatgttatgctttcatacaagaatcgttcaatattttcttgggctaccttgaacttcttttcatgaccaaca 13067737  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 13162080 - 13162152
Alignment:
Q  157 aaatgttacactttcatacaagaatcggtcaagattttcttgagctaccttgtacttcttttcttgaccaaca 229  Q
    |||||||| |||||||||||||||||||||||||| |||||| || |||||| ||||||| ||||||||||||    
T  13162080 aaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaaca 13162152  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 19727560 - 19727723
Alignment:
Q  2 cctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaat 101  Q
    |||||||| || |||| ||||  |||||||||||||||||||||| ||| | || | |||||||| ||||||||||| ||||||||||  |||           
T  19727560 cctgctaaaaagagagtgagtaaattgtctctaagatacttctcattcatttccccctttccagatccttccttcattagtgcttttaggaag------- 19727652  T
Q  102 aagattcatccatttcttcactgctgctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaa 180  Q
         |||||||| ||||||||||||||||||||||||| ||||| ||  |||| |||||| | |||||||||||||||    
T  19727653 -----tcatccatctcttcactgctgctgcacttgctttgctctt-gc--ttggaaaatgtaatactttcatacaagaa 19727723  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 13086701 - 13086754
Alignment:
Q  174 acaagaatcggtcaagattttcttgagctaccttgtacttcttttcttgaccaa 227  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||    
T  13086701 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaa 13086754  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 13010794 - 13010840
Alignment:
Q  151 tttggcaaatgttacactttcatacaagaatcggtcaagattttctt 197  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  13010794 tttggaaaatgttatactttcatacaagaatcggtcaagattttctt 13010840  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 13101407 - 13101587
Alignment:
Q  2 cctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaat 101  Q
    |||||||| || |||| || | |||||||||||||||||||||||  || | || | |||||||| ||||||||| | ||||||||||  |||           
T  13101407 cctgctaaaaagagagtgattacattgtctctaagatacttctcatccatttccccctttccagatccttccttcgttagtgcttttaggaag------- 13101499  T
Q  102 aagattcatccatttcttcactgctgctgcacttgcttttctcttcgcatttggcaaatgttacactttcatacaagaatcggtcaagattttctt 197  Q
         |||||||| |||||||||||||||||||||| || ||||| ||  |||| ||| || | ||||||||||||||| | ||||||||||||||    
T  13101500 -----tcatccatctcttcactgctgctgcacttgcattgctctt-gc--ttggaaaacgtaatactttcatacaagaacctgtcaagattttctt 13101587  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 13214226 - 13214358
Alignment:
Q  2 cctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaat 101  Q
    |||||||| || |||| ||  ||||||||||||||||||||||||  || | || | |||||| | ||||||||||| ||||||||||| |||           
T  13214226 cctgctaaaaagagagtgatcgcattgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttacgaag------- 13214318  T
Q  102 aagattcatccatttcttcactgctgctgcacttgcttttctctt 146  Q
         |||||||| ||||||||||||||||||||||||| |||||    
T  13214319 -----tcatccatctcttcactgctgctgcacttgctttgctctt 13214358  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 13007607 - 13007695
Alignment:
Q  2 cctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttac 90  Q
    |||||||| || |||| |||  ||||||||||||||||||||||   || |||| | |||||||  ||||||||||| |||||||||||    
T  13007607 cctgctaaaaagagagtgaggacattgtctctaagatacttctcgtccattcccccgtttccagctccttccttcataagtgcttttac 13007695  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 13080480 - 13080440
Alignment:
Q  187 aagattttcttgagctaccttgtacttcttttcttgaccaa 227  Q
    |||||||||||  ||||||||||||||||| ||||||||||    
T  13080480 aagattttcttttgctaccttgtacttcttctcttgaccaa 13080440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 31396460 - 31396234
Alignment:
Q  2 cctgctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaat 101  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||| ||||||| | ||||||||| |||||||||  |||| || |||| ||||    ||    
T  31396460 cctgctaacaaaagagagagcacattgtctctaagatacttgtcaatcactccattatttccagatccttccttcg-cagtactgttacaaagt----at 31396366  T
Q  102 aagattcatccatttcttcactgctgctgcacttgcttttctcttcgcatttggcaaa-tgttacactttcatacaagaatcggtcaagattttcttgag 200  Q
    || ||||||| |||||||| ||||| |||||||| |||| ||||| || ||  | ||| ||||| ||| |||||||||||||||| |||||||||||| |    
T  31396365 aacattcatcgatttcttcgctgctcctgcacttactttgctctttgcgttccgaaaaatgttatactgtcatacaagaatcggttaagattttcttggg 31396266  T
Q  201 ctaccttgtacttcttttcttgaccaacaaga 232  Q
    |||||| |||| ||||||||||||||| ||||    
T  31396265 ctacctcgtacctcttttcttgaccaagaaga 31396234  T

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