View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9850_high_2 (Length: 349)

Name: NF9850_high_2
Description: NF9850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9850_high_2
NF9850_high_2
[»] chr8 (13 HSPs)
chr8 (22-349)||(14727568-14727891)
chr8 (24-169)||(15329839-15329984)
chr8 (24-169)||(15510208-15510353)
chr8 (24-169)||(28865933-28866078)
chr8 (39-205)||(28693133-28693300)
chr8 (22-204)||(30648837-30649019)
chr8 (22-133)||(29552811-29552922)
chr8 (22-199)||(26089184-26089364)
chr8 (63-199)||(27714299-27714435)
chr8 (60-140)||(26090238-26090318)
chr8 (297-349)||(26089068-26089120)
chr8 (111-169)||(31039553-31039611)
chr8 (288-349)||(28865769-28865830)
[»] chr1 (2 HSPs)
chr1 (22-218)||(26086364-26086563)
chr1 (287-349)||(26086619-26086681)
[»] chr7 (2 HSPs)
chr7 (43-185)||(6610854-6610999)
chr7 (23-198)||(17292587-17292762)
[»] chr3 (1 HSPs)
chr3 (57-204)||(4819862-4820009)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 349
Target Start/End: Complemental strand, 14727891 - 14727568
Alignment:
Q  22 ctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactcc 121  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727891 ctgacaagacagatcttccaacattttttggggtggaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactcc 14727792  T
Q  122 accagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtcacttctagtg 221  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  14727791 accagggggactcaaaactgattggtacatggcagttgcaataagagtggcgactatcaaccaaatgttgcgttgctcttctgtcatgtcacttctagtg 14727692  T
Q  222 cgagttatctcagttaccaatttattactcatagttttggttgtggccattaacctcaaactatgtatgtgcacgtgtgggagcatcagcgacttctatg 321  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||    
T  14727691 cgagttatctcagataccaatttattactcatagttttggttgtggccattaacctcaacc----tatgtgcacgtgtgggagcatcagcgacttctatg 14727596  T
Q  322 ctatgttttgctccaacacttaataata 349  Q
    ||||||||||||||||||||||||||||    
T  14727595 ctatgttttgctccaacacttaataata 14727568  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 15329984 - 15329839
Alignment:
Q  24 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 123  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15329984 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccac 15329885  T
Q  124 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 169  Q
    |||||||||||| || ||||| |||||||| |||||||| ||||||    
T  15329884 cagggggactcagagttgattcgtacatggtagttgcaataagagt 15329839  T

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Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 15510353 - 15510208
Alignment:
Q  24 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 123  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15510353 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccac 15510254  T
Q  124 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 169  Q
    |||||||||||| || ||||| |||||||| |||||||| ||||||    
T  15510253 cagggggactcagagttgattcgtacatggtagttgcaataagagt 15510208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 28866078 - 28865933
Alignment:
Q  24 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 123  Q
    |||||||||||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  28866078 gacaagacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccac 28865979  T
Q  124 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 169  Q
    |||||||||||| || ||||| | |||||| |||||||| ||||||    
T  28865978 cagggggactcagagttgattcgaacatggtagttgcaataagagt 28865933  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 28693133 - 28693300
Alignment:
Q  39 ccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcact-aatctgataaactccaccagggggactcaaa 137  Q
    ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||  ||| |    
T  28693133 ccaacatttgctggggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccagggggtgtcaga 28693232  T
Q  138 gctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgt 205  Q
    |||||||   |||||| |||||||| |||||| |||| ||| ||||||||| ||||||| || |||||    
T  28693233 gctgattcaaacatggtagttgcaataagagtcgcgactattaaccaaatgttgcgttgatcctctgt 28693300  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 30649019 - 30648837
Alignment:
Q  22 ctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactcc 121  Q
    |||||||||| ||| | ||| ||||| ||||||  ||||| ||| |||  |||||||||||||||   ||| ||||||||||||||| |||||||| |||    
T  30649019 ctgacaagactgatttcccagcatttcctggggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattcc 30648920  T
Q  122 accagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 204  Q
    |||||||||||||||  ||||||| || |||||||| ||||||||||| || | |||||||||| || | |||||||| ||||    
T  30648919 accagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctg 30648837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 29552922 - 29552811
Alignment:
Q  22 ctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactcc 121  Q
    |||||| ||| ||| ||||| ||||| || |||| |||||||||||||  |||||||||||||||||||| ||||||| |||| ||| ||||||||||||    
T  29552922 ctgacatgaccgattttccagcatttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactcc 29552823  T
Q  122 accagggggact 133  Q
    ||||||||||||    
T  29552822 accagggggact 29552811  T

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Target: chr8; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 26089364 - 26089184
Alignment:
Q  22 ctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattg---tcaccagcactaatctgataaac 118  Q
    ||||||| |||||| | ||| ||||| |||| || |||||||||||||  |||||||||||||||| |  ||||   |||| |||||||| ||||||||     
T  26089364 ctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagcactaacctgataaat 26089265  T
Q  119 tccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctc 199  Q
    ||||| ||||||||||||  ||||||| || || ||||||||||||||||| || | |||||||||| || | ||||||||    
T  26089264 tccactagggggactcaatcctgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctc 26089184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 27714435 - 27714299
Alignment:
Q  63 gtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattggtacatggcagttgcaa 162  Q
    |||||||  |||||||| ||||| | ||||||||||| |||| ||| ||||||||||||||||  |||| |||| |||||||| |||||||| |||||||    
T  27714435 gtagaattagaggaagtaatgttgacattattgtcactagcattaacctgataaactccaccaacgggagtcaatgctgattgatacatggctgttgcaa 27714336  T
Q  163 caagagtggcgattatcaaccaaatgctgcgttgctc 199  Q
    ||||||| || | ||||| |||| || ||||||||||    
T  27714335 caagagtcgcaactatcatccaagtgttgcgttgctc 27714299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 26090318 - 26090238
Alignment:
Q  60 atagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagct 140  Q
    ||||||||||   |||||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||| ||||||||    
T  26090318 atagtagaattgaaggaagtgatgttccaattattgtcaccaaccctaatctgataaactccaccatggggagtcaaagct 26090238  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 26089120 - 26089068
Alignment:
Q  297 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataata 349  Q
    |||||||||||||| || |||||||||| |||||||||||| |||||||||||    
T  26089120 tgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataata 26089068  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 31039553 - 31039611
Alignment:
Q  111 tgataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 169  Q
    ||||||||||||||||||||||| |  |||||||| ||| | |||||||||| ||||||    
T  31039553 tgataaactccaccagggggactaagtgctgattgatacgtcgcagttgcaataagagt 31039611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 28865830 - 28865769
Alignment:
Q  288 atgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataata 349  Q
    ||||||||||||||||||||| | |||||||| |||  |||||| |||| |||| |||||||    
T  28865830 atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataata 28865769  T

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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 26086364 - 26086563
Alignment:
Q  22 ctgacaagacagatcttccaacattttctggggtg---gaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaac 118  Q
    |||||||||||||| | ||||||||| || ||||    |||||||||||||  |||||||||||||||||| |||||||||| |||||| || |||||||    
T  26086364 ctgacaagacagatttcccaacatttccttgggtactagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaac 26086463  T
Q  119 tccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtcacttcta 218  Q
    ||||||||||||| ||| ||||||||  ||||||| ||| |||| |||||  |||| ||| ||||||||| |||||||||| ||||||||||||||||||    
T  26086464 tccaccagggggagtcagagctgattcatacatggtagtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctctgtcatgtcacttcta 26086563  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 26086619 - 26086681
Alignment:
Q  287 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataata 349  Q
    |||||||| |||||||||||||||||||||| ||||||  |||||||||  | ||||||||||    
T  26086619 tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataata 26086681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 6610854 - 6610999
Alignment:
Q  43 cattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtca---ccagcactaatctgataaactccaccagggggactcaaagc 139  Q
    |||||||||| || ||||||||||||| ||||||||||||||||| |  |||||||   ||| |||||| |||||||| ||||||||| ||||||||  |    
T  6610854 cattttctggagtagaaatagtagaatttgaggaagtgatgttcacaccattgtcatcaccaacactaacctgataaattccaccaggaggactcaatcc 6610953  T
Q  140 tgattggtacatggcagttgcaacaagagtggcgattatcaaccaa 185  Q
    |||||| || |||||||||||||| ||||| || ||||||||||||    
T  6610954 tgattgatagatggcagttgcaacgagagtcgcaattatcaaccaa 6610999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 17292587 - 17292762
Alignment:
Q  23 tgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactcca 122  Q
    ||||||||| ||| | |||||||||| |||||| ||||| |||||||   |||||||| |||||| ||||||||||| || ||||| ||||||||| |||    
T  17292587 tgacaagaccgatttcccaacattttttggggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacacca 17292686  T
Q  123 ccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgct 198  Q
    |||  |||| | |  | |||||| ||  |||| |||||||||||||| || |||||||||||| || |||||||||    
T  17292687 ccaacgggagttagcgttgattgataggtggctgttgcaacaagagtcgcaattatcaaccaagtgttgcgttgct 17292762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 4820009 - 4819862
Alignment:
Q  57 gaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattggtacatggcag 156  Q
    |||||||||||||  | ||| |||||||||||| || |||||| |||| ||| ||||||||||||||| || |||  ||  ||||||||  |  ||||||    
T  4820009 gaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtggagacattgctgattgaaaggtggcag 4819910  T
Q  157 ttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 204  Q
    ||||||||||||| || | |||||||||| || |||||||||| ||||    
T  4819909 ttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctg 4819862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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