View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9850_low_2 (Length: 431)
Name: NF9850_low_2
Description: NF9850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9850_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 21434994 - 21435397
Alignment:
| Q |
11 |
gactttcgtgttcaaatcttatcattttactagtagaccaagcttttggagttaacatgaatatggttccacttttgatcatctattcatctatatattg |
110 |
Q |
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| T |
21434994 |
gactttcgagttcaaagcttatcattttaccaatagaccaagcttttagagttaacatgaatatggttccattttcgatcatctattcacctatatattg |
21435093 |
T |
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| Q |
111 |
taagcccttgcattgatatttaggaaactctttctccattaaaagttttcgttagtatagggaaattataaattattaattcaacaatga-------atg |
203 |
Q |
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| T |
21435094 |
taagcccttgcattgatatttaggaaactctttctccattaaaagttttccttagtatagggaaattataaattattaattcaacgatgatacatgcatg |
21435193 |
T |
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| Q |
204 |
tactcatactctcaacactcggttaaaaaactcattttatttctctctctatgacatcatctacttgttatatctatcatatcagtgtcttgttctcctt |
303 |
Q |
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| T |
21435194 |
tactcatactcttaacactcggttaaaaaactcattttatttctctctctatcacatcatctacttgttacatctatcatatcagtgtcttgttctcctt |
21435293 |
T |
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| Q |
304 |
aatttgaaggtgtatattcctacatagaggggtggaggcaggaatttaaagttaggagaaccaagtataaaaaacataatttgattttaaaaacaattgt |
403 |
Q |
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| T |
21435294 |
aatttgaaggtatatattcctacatagagggatggaggcaggaatttaaagttaggagaaccgagtataaaaaatataatttgattttaaaaacaatttt |
21435393 |
T |
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| Q |
404 |
ttaa |
407 |
Q |
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|||| |
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| T |
21435394 |
ttaa |
21435397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 21441741 - 21441769
Alignment:
| Q |
403 |
tttaaatacaaaaggtatatgtgaaactc |
431 |
Q |
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| T |
21441741 |
tttaaatacaaaaggtatatgtgaaactc |
21441769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 24303600 - 24303690
Alignment:
| Q |
331 |
aggggtggaggcaggaatttaaagttaggagaaccaagtataaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatat |
422 |
Q |
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| T |
24303600 |
aggggcggaggtaggaatttaaagctaggggaaccgagtatatggaacataatttga-ttaaaaaataattgtttaaaaacaaaaggtatat |
24303690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 23825440 - 23825490
Alignment:
| Q |
372 |
aaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatat |
422 |
Q |
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| T |
23825440 |
aaaaaacataatttgattaaaagaataattgtttaaatataaaaggtatat |
23825490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 4306499 - 4306543
Alignment:
| Q |
379 |
ataatttgattttaaaaacaattgtttaaatacaaaaggtatatg |
423 |
Q |
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| T |
4306499 |
ataatttgattaaaaaaataattatttaaatacaaaaggtatatg |
4306543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 40338286 - 40338202
Alignment:
| Q |
337 |
ggaggcaggaatttaaagttaggagaaccaagtataaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatat |
422 |
Q |
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| T |
40338286 |
ggaggcgggaatttaaagctagggggaccgagtatatgaaacataatttga-ttaaaaaataattgtttaaaaacaaaaggtatat |
40338202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 25472652 - 25472562
Alignment:
| Q |
331 |
aggggtggaggcaggaatttaaagttaggagaaccaagtataaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatat |
422 |
Q |
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|||| ||||| |||||||||||| ||||| | ||| |||||||| | |||||||| | || ||||| |||| |||||||| ||||||||||| |
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| T |
25472652 |
agggatggagtcaggaatttaaaattagggggaccgagtataaatagcataattt-aattaaaaaataattttttaaatagaaaaggtatat |
25472562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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