View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9850_low_3 (Length: 425)
Name: NF9850_low_3
Description: NF9850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9850_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 104 - 407
Target Start/End: Original strand, 404085 - 404388
Alignment:
| Q |
104 |
tctctccaagagatggaacattcgtcctctatggcctttcgttcccgttatagacttcagcttttcaaccatattttttcctccatgtttcttgagcgag |
203 |
Q |
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| T |
404085 |
tctctccaagagatggaacattcgtcccctatggcctttcgttcccgttatagacttcagcgtttcaaccatattttttcctccatttttcttgagcgag |
404184 |
T |
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| Q |
204 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacgattcatttcaaattcctcaacaaatggatcaactatatatgctgataat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
404185 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacaattcatttcaaattcctcaacaaatggttcaactatatatgctgttaat |
404284 |
T |
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| Q |
304 |
gtatctctctattcatgctatcaatacttgggagcctagacgagctcactttcctaccaacattctgcgttgtacaacccttgttaatctcaagctttgt |
403 |
Q |
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| T |
404285 |
gtatctctctattcatgctatcaatacttgggagcctagacgagctcactttcctaccaacattctgcgttgtacaacccttgttaatctcaagctttgt |
404384 |
T |
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| Q |
404 |
cact |
407 |
Q |
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|||| |
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| T |
404385 |
cact |
404388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 404043 - 404090
Alignment:
| Q |
20 |
agacaggttgagcagtttaccagatgagatcatttgccacattctctc |
67 |
Q |
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| T |
404043 |
agacaggttgagcagtttaccagatgagatcatttgccacattctctc |
404090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 975497 - 975456
Alignment:
| Q |
217 |
tcattccatcaacagtttcttcctcgacattgaatacgattc |
258 |
Q |
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| T |
975497 |
tcattccatcaacactttcatccttgacattgaatacgattc |
975456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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