View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9850_low_5 (Length: 343)
Name: NF9850_low_5
Description: NF9850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9850_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 33649925 - 33649599
Alignment:
| Q |
1 |
taagcaccgcacacagtataacgaccattcttttccgctttccagattaaacggtcatcttggacctgagcaataagtggcatgttaagaatcttagcag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33649925 |
taagcaccgcacacagtataacgaccattcttttccgctttccagattaaacggtcatcttggacctgagcaataagtggcatgttaagaatcttagcag |
33649826 |
T |
|
| Q |
101 |
ctatatcaacgctaaaaatctggcgaactacctctttcatttcagctcttgtcgtatagattcatcaaattattaatggcaacataccgnnnnnnntgag |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
33649825 |
ctatatcaacgctaaaaacctggcgaactacctcttacatttcagctcttgttgtatagattcatcaaattattaatggcaacataccg-aaaaaatgag |
33649727 |
T |
|
| Q |
201 |
ctccacaatactttcatcaatacactccccgttagataaccaagggtcattcaaaatagaaatagaaaattcggaaccaatactccatcgagcacctcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33649726 |
ctccacaatactttcatcaatacactccccgttagataaccaagggtcattcaaaatagaaatagaaaattcggaaccaacactccatcgagcacctcca |
33649627 |
T |
|
| Q |
301 |
aaaacgataaaccgagcgcgtagaatgt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
33649626 |
aaaacgataaaccgagcgcgtagaatgt |
33649599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 49498461 - 49498174
Alignment:
| Q |
13 |
acagtataacgaccattcttttccgctttccagattaaacggtcatcttggacctgagcaataagtggcatgttaagaatcttagcagctatatcaacgc |
112 |
Q |
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|||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
49498461 |
acagaataacgaccatttttttctgctttccagattaaacggtcatcttgaacctgagcaataagtggcgtgttaagaatcttagcagctatatcaacac |
49498362 |
T |
|
| Q |
113 |
taaaaatctggcgaactacctctttcatttcagctcttgtcgtatagattcatcaaattattaatggcaacataccgnnnnnnntgagctcc-acaatac |
211 |
Q |
| |
|
|||||||||||||||||||||| ||| || | |||||||| |||||||||||||||||||||||||| ||||| | | ||||| || ||||||| |
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| T |
49498361 |
taaaaatctggcgaactacctc-ttctttcctgctcttgttgtatagattcatcaaattattaatggtaacattctgaacaaaatgagcacctacaatac |
49498263 |
T |
|
| Q |
212 |
tttcatcaatacactccccgttagataaccaagggtcattcaaaatagaaatagaaaattcggaaccaatactccatcgagcacctcca |
300 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |
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| T |
49498262 |
ttccatcaatacactccccgttagataaccaagggtcattcaaaatagaaatagaagagtcggaaccaatactccaccgagcacctcca |
49498174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 29956544 - 29956862
Alignment:
| Q |
10 |
cacacagtataacgaccattcttttccgctttccagattaaacggtcatcttggacctgagcaataagtggcatgttaagaatcttagcagctatatcaa |
109 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||| |||||| ||||||| |||||||||||| |
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| T |
29956544 |
cacacagaataacgactattcttttccgctttccagattaaacgatcatcttggaactaggcaataagtggcgtgttaaaaatcttatcagctatatcaa |
29956643 |
T |
|
| Q |
110 |
cgctaaaaatctggcgaactacctctttcatttcagctcttgtcgtatagattcatcaaattattaatggcaacataccgnnnnnnntgagctcc-acaa |
208 |
Q |
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| |||| || || |||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||| ||||| | ||||||| | || |
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| T |
29956644 |
cactaagaacctagcgaactacctc-ttcattccagctctagtcgtatagattaatcaaattattaatggtaacattctaaccaaaacgagctcctataa |
29956742 |
T |
|
| Q |
209 |
tactttcatcaatacactccccgttagataaccaagggtcattcaaaatagaaatagaaaattcggaaccaatactccatcgagcacctccaaaaacgat |
308 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||| | || || |||||||||| | |||||||||| ||||||| |
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|
| T |
29956743 |
tacttccatcaatacactctccgtcagataaccaagggtcattcaaaatagaaatagaagagccgaaatcaatactccaccaagcacctccacaaacgat |
29956842 |
T |
|
| Q |
309 |
aaaccgagcgcgtagaatgt |
328 |
Q |
| |
|
||| || | ||| ||||||| |
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| T |
29956843 |
aaatcgggtgcgcagaatgt |
29956862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 19234611 - 19234559
Alignment:
| Q |
58 |
tcttggacctgagcaataagtggcatgttaagaatcttagcagctatatcaac |
110 |
Q |
| |
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||||| |||||||||||||||||| ||| |||||||||| ||||||||||||| |
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|
| T |
19234611 |
tcttgtacctgagcaataagtggcgtgtgaagaatcttatcagctatatcaac |
19234559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 41339764 - 41339713
Alignment:
| Q |
215 |
catcaatacactccccgttagataaccaagggtcattcaaaatagaaataga |
266 |
Q |
| |
|
||||||| |||||||| ||||||||||| || ||||||||||| |||||||| |
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|
| T |
41339764 |
catcaatgcactccccattagataaccacggttcattcaaaatcgaaataga |
41339713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 20929155 - 20929007
Alignment:
| Q |
36 |
cgctttccagattaaacggtcatcttggacctgagcaataagtggcatgttaagaatcttagcagctatatcaacgctaaaaatctggcgaactacctct |
135 |
Q |
| |
|
||||||||| || || || || ||||| ||||| |||||||||||| | | ||||||||| | ||||||||||| |||| | || |||||||||| |
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| T |
20929155 |
cgctttccaaataaatcgatcctcttgtacctgggcaataagtggcgtatgaagaatcttgtctgctatatcaacattaaacacctaacgaactacct-g |
20929057 |
T |
|
| Q |
136 |
ttcatttcagctcttgtcgtatagattcatcaaattattaatggcaacat |
185 |
Q |
| |
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|||||| || ||||| | |||| ||||||||||||||| |||| ||||| |
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|
| T |
20929056 |
ttcattccaactcttaccatataaattcatcaaattattgatggtaacat |
20929007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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