View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9850_low_6 (Length: 325)
Name: NF9850_low_6
Description: NF9850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9850_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 3879847 - 3880156
Alignment:
| Q |
10 |
gatggacatcaaatgtgggtggtggatataattgtggaatctcttggaccaagaattccatttgtattcagtttttctctaaatttctatatattgaagt |
109 |
Q |
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| T |
3879847 |
gatggccattaaatgtgggtggtggatataattgtggaatctcttggaccaagaattccatttgtattcagtttttctctaaatttctatatattgaagt |
3879946 |
T |
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| Q |
110 |
gtatatgaaagcttgttgttgatactacannnnnnnnnnnnnnnnattgattgaaattgaccaagattcatgttctacaggaccagatgccaacttccac |
209 |
Q |
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| T |
3879947 |
gtatatgaaagcttgttgttgatactacaatttttatccttttttattgattgaaattgaccaagattcatgttctactggaccagatgccaacttccat |
3880046 |
T |
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| Q |
210 |
tttccaaataccaaactatggacagcagcagtctgaagtgttgaacacacaaaatcaggatgcaatccttactcaagcacttacaagtactcctaacagt |
309 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3880047 |
tttgcaaataccaaactatggacagcagcagcctgaagtgttgaacacacaaaatcaggatgcaatccttactcaagcacttacaagtactccaaacagt |
3880146 |
T |
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| Q |
310 |
cagactttca |
319 |
Q |
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| T |
3880147 |
cagactttca |
3880156 |
T |
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