View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9850_low_7 (Length: 238)
Name: NF9850_low_7
Description: NF9850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9850_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 30363594 - 30363795
Alignment:
| Q |
1 |
tttttagtttttctttctggtccttttatttgcttacaattaacattttgataataatttaagggtgttaactgnnnnnnnnattactttaattttcaga |
100 |
Q |
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| T |
30363594 |
tttttagtttttctttctggtcattttatttgcttagaattaacattttgataataatttaagggtgttaactgttttt----tta--ttacttttcaga |
30363687 |
T |
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| Q |
101 |
gtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaagaagacctacggatagaatg |
200 |
Q |
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| T |
30363688 |
gtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaagaagacctacagataaaatg |
30363787 |
T |
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| Q |
201 |
tttgaaga |
208 |
Q |
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|||||||| |
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| T |
30363788 |
tttgaaga |
30363795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 31466885 - 31466772
Alignment:
| Q |
95 |
ttcagagtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaagaagacctacggat |
194 |
Q |
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| T |
31466885 |
ttcagagtatggaatgggttctaagctttcagttgaaggcgacatgtatagcttcggaattctaattttagaaatgctgaccgcaaggagacctacagat |
31466786 |
T |
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| Q |
195 |
agaatgtttgaaga |
208 |
Q |
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| T |
31466785 |
gaaatgtttgaaga |
31466772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 10551276 - 10551363
Alignment:
| Q |
94 |
tttcagagtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaag |
181 |
Q |
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| T |
10551276 |
tttcagagtatggaatgggttttgaggtgtcaactgaaggtgacatgtatagctttggaattctgttattagaaatgttaactggaag |
10551363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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