View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9850_low_8 (Length: 227)
Name: NF9850_low_8
Description: NF9850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9850_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33650150 - 33649925
Alignment:
| Q |
1 |
aaaattcagtgagcaagatcctcatggttcgagttacaactaagacaatgtgtaggacattggactcatttgtcaaggagacgaacacgagtcggtaggc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33650150 |
aaaattaagtgagcaagatcctcatggttcgagttacaactaagacaatgtgtaggacattggactcatttgtcaaggacacgaacacgagtcggtaggc |
33650051 |
T |
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| Q |
101 |
agccccgatctatgcgccacactaaatatttaactttaggaggaaccttaagcttccaaattcttgatcaagcacgtcgtacgacggcgatgagaagaat |
200 |
Q |
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| T |
33650050 |
agccccgatatatgcgccacactaaatttttaactttaggaggaaccttaagcttccaaattcttgatcaagaac-tcgtacgacggagatgagaagaat |
33649952 |
T |
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| Q |
201 |
caatgagctcgtcaatacagagtcgat |
227 |
Q |
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| T |
33649951 |
caatgagctcgtcaatacagagtcgat |
33649925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 11819272 - 11819394
Alignment:
| Q |
36 |
acaactaagacaatgtgtaggacattggactcatttgtcaaggagacgaacacgagtcggtaggcagccccgatctatgcgccacactaaatatttaact |
135 |
Q |
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|||||||| ||| | |||||||||||| || | |||||||||||| ||||||||||||| ||||| |||||| || | |||||||| || |||||| |
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| T |
11819272 |
acaactaacacagtttgtaggacattgaacgcccttgtcaaggagatgaacacgagtcggaaggcaaccccgacacatacaccacactatattcttaact |
11819371 |
T |
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| Q |
136 |
ttaggaggaaccttaagcttcca |
158 |
Q |
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| T |
11819372 |
ttagggggaaccttgagcttcca |
11819394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 49498698 - 49498496
Alignment:
| Q |
1 |
aaaattcagtgagcaagatcctcatggttcgagttacaactaagacaatgtgtaggacattggactcatttgtcaaggagacgaacacgagtcggtaggc |
100 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
49498698 |
aaaattaagtgagcaagatcttcatggttcgagttacaactaacacaatgtgtagaacattggactcctttgtcaaggagacgaacacgagttggtaggc |
49498599 |
T |
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| Q |
101 |
agccccgatctatgcgccacactaaatatttaactttaggaggaaccttaagcttccaaattcttgatcaagcacgtcgtacgacggcgatgagaagaat |
200 |
Q |
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|||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||| || | | ||||||| |||||||||||| |
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| T |
49498598 |
agccccgacacatacgccacactaaatttttaactttaggaggaactttaagcttccaaattcctgaccaagaacct-ggacgacggagatgagaagaat |
49498500 |
T |
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| Q |
201 |
caat |
204 |
Q |
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|||| |
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| T |
49498499 |
caat |
49498496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 29956312 - 29956481
Alignment:
| Q |
3 |
aattcagtgagcaagatcctcatggttcgagttacaactaagacaatgtgtaggacattggactcatttgtcaaggagacgaacacgagtcggtaggcag |
102 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||| | || |
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| T |
29956312 |
aattaagtgagcaagatcctcatggtttgagttacaactaacacaatgtgtaggacattggattcctttatcaaggagacgaacacgagtcggtaagtag |
29956411 |
T |
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| Q |
103 |
ccccgatctatgcgccacactaaatatttaactttaggaggaaccttaagcttccaaattcttgatcaag |
172 |
Q |
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| T |
29956412 |
ccccggcacatacgccgcactaaatttttaactttaggaggaaccttaacctgcaaaattcctgaccaag |
29956481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 19234856 - 19234736
Alignment:
| Q |
38 |
aactaagacaatgtgtaggacattggactcatttgtcaaggagacgaacacgagtcggtaggcagccccgatctatgcgccacactaaatatttaacttt |
137 |
Q |
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| T |
19234856 |
aactaacacagtttgtaggacattgaacgcccttgtcaagaagacgaacacgagtcggaaggcggccccgacacatacgccacactagattcttaacttt |
19234757 |
T |
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| Q |
138 |
aggaggaaccttaagcttcca |
158 |
Q |
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|||||||||||| |||||||| |
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| T |
19234756 |
aggaggaaccttgagcttcca |
19234736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 20929406 - 20929255
Alignment:
| Q |
10 |
tgagcaagatcctcatggttcgagttacaactaagacaatgtgtaggacattggactcatttgtcaaggagacgaacacgagtcggtaggcagccccgat |
109 |
Q |
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|||||||| ||||||| |||||| |||||||| |||| || ||||||||||||| |||||||||||| | |||||| ||||||| | |||||||| |
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| T |
20929406 |
tgagcaaggtcctcataattcgagggacaactaacacaaatggttggacattggactcctttgtcaaggaggcaaacacgggtcggtaagaagccccgac |
20929307 |
T |
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| Q |
110 |
ctatgcgccacactaaatatttaactttaggaggaaccttaagcttccaaat |
161 |
Q |
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| T |
20929306 |
acatatgccacactaaattcttaaccttacggggtaccttgagcttccaaat |
20929255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 23576627 - 23576749
Alignment:
| Q |
36 |
acaactaagacaatgtgtaggacattggactcatttgtcaaggagacgaacacgagtcggtaggcagccccgatctatgcgccacactaaatatttaact |
135 |
Q |
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| T |
23576627 |
acaactaacacagtttgtaggacattgagcgcccttgtcaaggagacgaacacaagtcggaaggcaaccccaacacatacgccacactacattcttaact |
23576726 |
T |
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| Q |
136 |
ttaggaggaaccttaagcttcca |
158 |
Q |
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||||| |||||||| |||||||| |
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| T |
23576727 |
ttagggggaaccttgagcttcca |
23576749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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