View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9851_high_5 (Length: 289)
Name: NF9851_high_5
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 14039722 - 14039983
Alignment:
| Q |
5 |
gagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggctagggcattggattcgccgggttgga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14039722 |
gagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggctagggcattggattcgccgggttgga |
14039821 |
T |
|
| Q |
105 |
gagcaaaaccggttgtagagaacggtgttgttcctgcgccggataaaattccaggccaaacagtgtagttgcacttgttaacaattgtgaatgttgttgc |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14039822 |
gagcaaaaccggttgtagagaatggtgttgttcctgcgccggataaaattccaggccaaacagtgtagttgcacttgttaacaattgtgaatgttgttgc |
14039921 |
T |
|
| Q |
205 |
atatgaaccagttaggtattggaatagaattagggtaaccaaagttatggttgattgagttg |
266 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14039922 |
atatgaaacagttaggtattggaatagaattagggtaaccaaagtgatggttgattgagttg |
14039983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 18954693 - 18954937
Alignment:
| Q |
5 |
gagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggctagggcattggattcgccgggttgga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||| |||| || || ||||||||||| | |
|
|
| T |
18954693 |
gagaattttccggtggaatcttgagagcatagggttcggccccatagacggccggaccacttggggggtacggcgagggtgttcgactcgccgggttgaa |
18954792 |
T |
|
| Q |
105 |
gagcaaaaccggttgtagagaacggtgttgttcctgcgccggataaaattccaggccaaacagtgtagttgcacttgttaacaattgtgaatgttgttgc |
204 |
Q |
| |
|
||||||| ||||| || ||||| |||||||| | || |||||||||||||| |||||||| ||||| || || |||||| |||||||||||||||| | |
|
|
| T |
18954793 |
gagcaaagccggtggtggagaagggtgttgtgtcggcaccggataaaattcctggccaaactgtgtatttacagttgttagcaattgtgaatgttgtgga |
18954892 |
T |
|
| Q |
205 |
atatgaaccagttaggtattggaatagaattagggtaaccaaagt |
249 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
18954893 |
ataagaacctgttaggtattggagtagaattagggcaaccaaagt |
18954937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 8797896 - 8797688
Alignment:
| Q |
5 |
gagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggctagggcattggattcgccgggttgga |
104 |
Q |
| |
|
||||||||||| |||| ||||| |||||||| || |||||||||| |||||| ||||| || ||||| || || |||||||| ||||| ||||||| |
|
|
| T |
8797896 |
gagaattttccagtggggtcttgggagcagagtgttcgtccccatacacggccggaccatgatggtggtacagcgagagcattggactcgcctggttgga |
8797797 |
T |
|
| Q |
105 |
gagcaaaaccggttgtagagaacggtgttgttcctgcgccggataaaattccaggccaaacagtgtagttgcacttgttaacaattgtgaatgttgttgc |
204 |
Q |
| |
|
|| | || ||||| || ||||||||| ||| || ||||||||||||||||| |||||||| ||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
8797796 |
gaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaattgttcacaattgtgaatgttgttga |
8797697 |
T |
|
| Q |
205 |
atatgaacc |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
8797696 |
atatgaacc |
8797688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 53177554 - 53177502
Alignment:
| Q |
151 |
aattccaggccaaacagtgtagttgcacttgttaacaattgtgaatgttgttg |
203 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
53177554 |
aattcccggccataccgtgtagttgcatttgttaacgagtgtgaatgttgttg |
53177502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University