View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9851_high_6 (Length: 253)
Name: NF9851_high_6
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1750660 - 1750413
Alignment:
| Q |
1 |
tattagtagccttagcccttaatattgttgaatcctcattagttaaaatgtattagaaaatcattttatttgaattacatgactatgtgctttattttag |
100 |
Q |
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| T |
1750660 |
tattagtagccttagcccttaatattgttgaatcctcattagttaaaatgtattagaaaatcattttatttgaattacatgactatgtgctttattttag |
1750561 |
T |
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| Q |
101 |
aacttattgtgtttggtttcattggtctgaacggaaattgcttgtcataatatttgagggatgattcttgtaggttcctttttattat----ctattggc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1750560 |
aacttattgtgtttggtttcattggtctgaacggaagttgcttgtcataatatttgagggatgattcttgtaggttcctttttattatctatctattggc |
1750461 |
T |
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| Q |
197 |
aaaatttgttatgatttcatcatgctttttcttctttgttatctctgc |
244 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1750460 |
aaaatttggtatgatttcatcatgctttttcttctttgttatctctgc |
1750413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 6004871 - 6004832
Alignment:
| Q |
37 |
cattagttaaaatgtattagaaaatcattttatttgaatt |
76 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
6004871 |
cattagttaaaatgtattagaaaatcatttgttttgaatt |
6004832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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