View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9851_low_1 (Length: 471)
Name: NF9851_low_1
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_1 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 33041349 - 33040892
Alignment:
| Q |
1 |
tgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatatggagcaagcatatgctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33041349 |
tgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaactcaaggggataaaaaatggaataggtagcatatggagcaagcatatgttc |
33041250 |
T |
|
| Q |
101 |
tgtcggtcaaattcccacgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataa |
200 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33041249 |
tgtcggtcaaattcccacgttgctctggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataa |
33041150 |
T |
|
| Q |
201 |
tctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagat |
300 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33041149 |
tccgaagggttgaaaagagtgagacattttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccacattagagat |
33041050 |
T |
|
| Q |
301 |
catcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtctaatccaaattattc |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33041049 |
cgtcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtctaatccgaattattc |
33040950 |
T |
|
| Q |
401 |
ttttcggtcatgttttttatgttctctttcctttatgtgtatggatagcccggtccct |
458 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33040949 |
ttttctgtcatgttttttatgttctctttcctttatgtgtatggatagcccggtccct |
33040892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 88 - 457
Target Start/End: Complemental strand, 33020128 - 33019761
Alignment:
| Q |
88 |
caagcatatgctctgtcggtcaaattcccacgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattg |
187 |
Q |
| |
|
|||||||| |||||||||| |||| ||||| | ||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
33020128 |
caagcataggctctgtcggacaaagtcccatgttgcactggatgtaactccaattgaacctgttcaacagggacagtgggcatatctaccacctgaattg |
33020029 |
T |
|
| Q |
188 |
cttttggacataatctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccg |
287 |
Q |
| |
|
|||||||| |||||| | ||||||||| |||||| ||||||||||||||| ||||| ||||| ||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
33020028 |
cttttggatataatccgtagggttgaagagagtgcgacatcttggcctgcccgtgccattgttgtctgttgtgcttcggtatgtaaatcgtggaggtcca |
33019929 |
T |
|
| Q |
288 |
ccatgttagagatcatcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtcta |
387 |
Q |
| |
|
|| ||||||||| ||||||||||||| |||||||||| | | ||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
33019928 |
tcacgttagagattgtcaagactcctcagcaatgtggaatgcttacatttcctatttcattgaagcaggtaatgaatt-cttctcccactttctggtctg |
33019830 |
T |
|
| Q |
388 |
atccaaattattcttttcggtcatgttttttatgttctctttcctttatgtgtatggatagcccggtccc |
457 |
Q |
| |
|
|| |||||||||| | | | ||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33019829 |
atacaaattattcgtattgctca-gttttttatgttctctttcctttatgtgtatgactagcccggtccc |
33019761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 136 - 456
Target Start/End: Complemental strand, 33026128 - 33025805
Alignment:
| Q |
136 |
tccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcct |
235 |
Q |
| |
|
||||||| ||||| ||| | ||||| |||||| || |||||||| |||||||||||||||||||||| | | ||||||| | |||||||||||||||||| |
|
|
| T |
33026128 |
tccaattaaacctcttccaaagggagaatgggaaactctaccacgtgaattgcttttggacataatccgtaaggttgaagaaagtgagacatcttggcct |
33026029 |
T |
|
| Q |
236 |
gcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagatcatcaagactcctcaacaatgtggaaggatcacat |
335 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||||||| || ||||||| |||| |||| ||| ||||||||||||||||||| |
|
|
| T |
33026028 |
gcacgtgctgttgttgtcgtctgtgcttcagtatgtaaatcatggaggtccgtcacaaaagagatcgtcaaaactcttcagcaatgtggaaggatcacat |
33025929 |
T |
|
| Q |
336 |
ttcctatttcagtgaagcaggtaatcaatta---tttcacccactttctggtctaatccaaattattcttttcggtcatgttttttatgttctctttcct |
432 |
Q |
| |
|
||||||||||| ||| ||||| ||| |||| |||||||||||||||||||||| ||||| |||||| || || ||||||||||||||||||||| |
|
|
| T |
33025928 |
ttcctatttcattgatgcaggcaatacattaattcttcacccactttctggtctaattcaaatgattcttatccctcgagttttttatgttctctttcct |
33025829 |
T |
|
| Q |
433 |
ttatgtgtatggatagcccggtcc |
456 |
Q |
| |
|
||||||| ||| ||||| ||||| |
|
|
| T |
33025828 |
ttatgtgcatgcttagcctggtcc |
33025805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 101 - 365
Target Start/End: Original strand, 32828684 - 32828948
Alignment:
| Q |
101 |
tgtcggtcaaattcccacgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataa |
200 |
Q |
| |
|
||||||||||| || || | |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
32828684 |
tgtcggtcaaagtcgcatgttgctccggatgtaactccaattgaacctattcaacaaggacaatgggcgagtctacctcctgaattgcttttggacataa |
32828783 |
T |
|
| Q |
201 |
tctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagat |
300 |
Q |
| |
|
|| | ||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
32828784 |
tccgtagggttgaagagagtgagacatcttggcctgctcgtgctgttgttgttttttgtgcttcggtatgtaaatcatggaggtccgttactaaggagat |
32828883 |
T |
|
| Q |
301 |
catcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaatt |
365 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||||||| |||| || ||||| |||| |
|
|
| T |
32828884 |
tatcaagactccccagcaatgcggaaggatcacatttcctatttcattgaaacaagtaataaatt |
32828948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 33030452 - 33030307
Alignment:
| Q |
311 |
cctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtctaatccaaattattcttttcggtca |
410 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
33030452 |
cctcagcaatgtgaaaggatcacatttcctatttcagtgaagcaggtaataaattatt-cacccactttctggtctaatccaatttatcattttccctca |
33030354 |
T |
|
| Q |
411 |
tgttttttatgttctctttcctttatgtgtatggatagcccggtccc |
457 |
Q |
| |
|
| ||||||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
33030353 |
tattttttatgttctatttccttcatgtgtatgcatagcccggtccc |
33030307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 33030563 - 33030517
Alignment:
| Q |
128 |
gatgtaactccaattgaacctattcaacagggacaatgggcaagtct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
33030563 |
gatgtaactccagttgaacctattcaacagggacaatgggaaagtct |
33030517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 32828584 - 32828651
Alignment:
| Q |
16 |
tggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatat |
83 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| || | |||||||| |||||||||||||||||||||| |
|
|
| T |
32828584 |
tggaaacatgtcattcaaaagtatagtccgcgaactcaaggggatgaaaaatggaataggtagcatat |
32828651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 283
Target Start/End: Complemental strand, 7880317 - 7880175
Alignment:
| Q |
141 |
ttgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcctgcacg |
240 |
Q |
| |
|
||||||||||||| |||||||||||||| | | ||||| |||||||||| | || ||||| ||||||| ||| ||| ||||| |||||||||||||| |
|
|
| T |
7880317 |
ttgaacctattcagcagggacaatgggctaatataccatctgaattgctacttgatataattcgaagggtagaagagaccgagacttcttggcctgcacg |
7880218 |
T |
|
| Q |
241 |
tgctgttgttatcttttgtgcttcagtatgtaaatcatggagg |
283 |
Q |
| |
|
||||||||| | | ||||||||| || ||||||||||||||| |
|
|
| T |
7880217 |
tgctgttgtcgtttcttgtgcttctgtgtgtaaatcatggagg |
7880175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 12494 - 12550
Alignment:
| Q |
227 |
tcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggagg |
283 |
Q |
| |
|
||||||||||||||| ||||||| || | ||||||||| || ||||||||||||||| |
|
|
| T |
12494 |
tcttggcctgcacgtactgttgtcatttcttgtgcttctgtgtgtaaatcatggagg |
12550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University