View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9851_low_10 (Length: 250)
Name: NF9851_low_10
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_10 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 386496 - 386247
Alignment:
| Q |
1 |
ataagcaaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctcc |
100 |
Q |
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| T |
386496 |
ataagcaaccttccaaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctcc |
386397 |
T |
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| Q |
101 |
aattcataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtggg |
200 |
Q |
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| T |
386396 |
aattcataatcaatacttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtgaaaagtccacacataaacgagtggg |
386297 |
T |
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| Q |
201 |
ccttatgccttgttgcactaaggatagacatcaaatgcctctcattctct |
250 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
386296 |
ccttatgctttgttgcactaaggatagacatcaaatgcctctcattctct |
386247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 38729046 - 38729295
Alignment:
| Q |
1 |
ataagcaaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctcc |
100 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729046 |
ataagcaaccttccaaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcaccttcctcc |
38729145 |
T |
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| Q |
101 |
aattcataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtggg |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| | |
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| T |
38729146 |
aattcataatcaatactttgaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtgaatagtccacacataaacgagtgcg |
38729245 |
T |
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| Q |
201 |
ccttatgccttgttgcactaaggatagacatcaaatgcctctcattctct |
250 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729246 |
ccttatgctttgttgcactaaggatagacatcaaatgcctctcattctct |
38729295 |
T |
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