View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9851_low_11 (Length: 250)
Name: NF9851_low_11
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 24990540 - 24990780
Alignment:
| Q |
1 |
atattaataaactaggcgcaaagatcacatgcaagaacattaaatgacaggaaatgttaagagtctcacgttggatgacaattttacgataattaaaatc |
100 |
Q |
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| T |
24990540 |
atattaataaactagtagaaaagatcacatgcaagagcattaaatgacaggaaatgttaagagtctcacgttcgatgacaattttacgataattaaaatc |
24990639 |
T |
|
| Q |
101 |
tttttaaaaattatttctagccgatgaacgtgaagtaaacaatgcattaaaaatctaccttgctttccctttttcttttgagtaggattccatgtccctt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24990640 |
tttttaaaaatcatttctagccgatgaacgtgaagtaaacaatgcattaaaaatctaccttgctttccctttttcttttgagtaggattccatgtccctt |
24990739 |
T |
|
| Q |
201 |
tatcccataaatgagcttcataccttccggtccacctatgc |
241 |
Q |
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| T |
24990740 |
tatcccataaatgagcttcataccttccagtccacctatgc |
24990780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 16869915 - 16869955
Alignment:
| Q |
200 |
ttatcccataaatgagcttcataccttccggtccacctatg |
240 |
Q |
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|||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
16869915 |
ttatcccatagatgagcttcaaaccttccggtccatctatg |
16869955 |
T |
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