View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9851_low_13 (Length: 241)
Name: NF9851_low_13
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 1750752 - 1750844
Alignment:
| Q |
1 |
ttctcgaatcaatatcaaacaacataatttcacagcgaacacaataagaaatataagaattctcgttggcatggtaagacattaacacaacat |
93 |
Q |
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| T |
1750752 |
ttctcgaatcaatatcaaacaacataatttcacagcgaacacaataagaaatataagaattctcgttggcatggtaagacattaacacaacat |
1750844 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 1750838 - 1750928
Alignment:
| Q |
135 |
acaacataaacaacacatttaaaccagtaagcggaagcaaatttagaacactaacctccagtcattgctatgtgaaaaaagagtttgttgt |
225 |
Q |
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| T |
1750838 |
acaacataaacaacacatttaaaccggtaagcggaagcaaattcataacactaacctccagccattgctatgtgagaaaagagtttgttgt |
1750928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 664515 - 664576
Alignment:
| Q |
41 |
acaataagaaatataagaattctcgttggcatggtaagacattaacacaacatgactaattt |
102 |
Q |
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| T |
664515 |
acaataagaaatagaagatttctcattggcgtagtaagatattaacacaacatgtctaattt |
664576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 6004996 - 6005050
Alignment:
| Q |
23 |
cataatttcacagcgaacacaataagaaatataagaattctcgttggcatggtaa |
77 |
Q |
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| T |
6004996 |
cataatttcacaacaagcacaataagagatacaagatttctcgttggcatggtaa |
6005050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 45795993 - 45796051
Alignment:
| Q |
169 |
aagcaaatttagaacactaacctccagtcattgctatgtgaaaaaagagtttgttgttg |
227 |
Q |
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| T |
45795993 |
aagcaaattaagaatactaacctccggcaattgctacgtgaaaaaagagcttgttgttg |
45796051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 25322123 - 25322163
Alignment:
| Q |
121 |
atttaaacatgtaaacaacataaacaacacatttaaaccag |
161 |
Q |
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| T |
25322123 |
atttaaacatgtaaacaacactaacaacacgtttaaaccag |
25322163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 15547348 - 15547433
Alignment:
| Q |
102 |
tgtaaattatttctaatcaatttaaacatgt-aaacaacataaacaacacatttaaaccagtaagcggaagcaaatttagaacacta |
187 |
Q |
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| T |
15547348 |
tgtaaattatttctaatcgatt-aaacatgttaaacaacataaacaacacatttaaatcagtaagcggaagcaaattaagaacacta |
15547433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 14989273 - 14989216
Alignment:
| Q |
102 |
tgtaaattatttctaatcaatttaaacatg-taaacaacataaacaacacatttaaac |
158 |
Q |
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| T |
14989273 |
tgtaaatgatttctaatctatttaaacatgttaaacagcataaaaaacacatttaaac |
14989216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 14989525 - 14989574
Alignment:
| Q |
110 |
atttctaatcaatttaaacatgt-aaacaacataaacaacacatttaaac |
158 |
Q |
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| T |
14989525 |
atttctaatcgatttaaacatattaaacaacataaacaacacatttaaac |
14989574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 17675904 - 17675811
Alignment:
| Q |
102 |
tgtaaattatttctaatcaatttaaacatgt-aaacaacataaacaacacatttaaaccagtaagcggaagcaaatttagaacactaacctcca |
194 |
Q |
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| T |
17675904 |
tgtaaattagttctaatcgatttaagcatgttaaacaacataaacaacacatttaaactcgtaagcagaagccaattaagaacactaacctcca |
17675811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 17676280 - 17676376
Alignment:
| Q |
109 |
tatttctaatcaatttaaacatgtaaac-aacataaacaacacatttaaaccagtaagcggaagcaaatttagaacactaacctccagtcattgcta |
204 |
Q |
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| T |
17676280 |
tatttctaatcgatttaaacatgttaaccaacataaacaacacatttaaaccattaagcgaaaacaaattaagaatactaacctccaaccattgcta |
17676376 |
T |
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